Hi all. Someone was asking me where Stan has been used to study and fight coronavirus. I came up with a few examples; see below. If people have others, please share in this thread.
I’ve limited myself to examples where there is some report or public code; I did not include various ongoing projects that have not produced anything public yet.
Here’s a list so far:
This from the Imperial College team:
https://github.com/ImperialCollegeLondon/covid19model/tree/v1.0 and https://www.imperial.ac.uk/media/imperial-college/medicine/sph/ide/gida-fellowships/Imperial-College-COVID19-Europe-estimates-and-NPI-impact-30-03-2020.pdf
This from University of Bern:
https://www.medrxiv.org/content/10.1101/2020.03.04.20031104v1.full.pdf (see discussion here: https://statmodeling.stat.columbia.edu/2020/03/09/coronavirus-model-update-background-assumptions-and-room-for-improvement/)
This from NYU Abu Dhabi:
This paper in New England Journal of Medicine:
https://www.nejm.org/doi/10.1056/NEJMc2004973 (see supplementary information here: https://www.nejm.org/doi/suppl/10.1056/NEJMc2004973/suppl_file/nejmc2004973_appendix.pdf)