Hi,
I’m trying to install rstan in R(3.5.3)/Rstudio (1.1.463 )/Windows 10. I installed Rtools35 according to instructions.
When I run
pkgbuild::has_build_tools(debug = TRUE)
it returns
TRUE
like it should.
My C:\\Users\user\documents\.R\makevars.win file contains:
CXX14FLAGS=-O3 -march=native -mtune=native
CXX11FLAGS=-O3 -march=native -mtune=native
However when I try to compile a .stan file it throws an error like this
fit <- stan(file = '8schools.stan', data = schools_dat)
Error in compileCode(f, code, language = language, verbose = verbose) :
Compilation ERROR, function(s)/method(s) not created! In file included from C:/Users/user/Documents/R/win-library/3.5/BH/include/boost/random/detail/integer_log2.hpp:19:0,
from C:/Users/user/Documents/R/win-library/3.5/BH/include/boost/random/detail/int_float_pair.hpp:26,
from C:/Users/user/Documents/R/win-library/3.5/BH/include/boost/random/exponential_distribution.hpp:27,
from C:/Users/user/Documents/R/win-library/3.5/BH/include/boost/random/gamma_distribution.hpp:25,
from C:/Users/user/Documents/R/win-library/3.5/StanHeaders/include/stan/math/prim/mat/prob/dirichlet_rng.hpp:5,
from C:/Users/user/Documents/R/win-library/3.5/StanHeaders/include/stan/math/prim/mat.hpp:276,
from C:/Users/user/Documents/R/win-library/3.5/StanHeaders/include/stan/math/rev/mat.hpp:12,
from C:/Users/user/Documents/R/win-libra
In addition: Warning message:
In system(cmd, intern = !verbose) :
running command 'C:/PROGRA~1/R/R-35~1.3/bin/x64/R CMD SHLIB file19ac68277a72.cpp 2> file19ac68277a72.cpp.err.txt' had status 1
Error in sink(type = "output") : invalid connection
EDIT: traceback() gives
4: sink(type = "output")
3: cxxfunctionplus(signature(), body = paste(" return Rcpp::wrap(\"",
model_name, "\");", sep = ""), includes = inc, plugin = "rstan",
save_dso = save_dso | auto_write, module_name = paste("stan_fit4",
model_cppname, "_mod", sep = ""), verbose = verbose)
2: stan_model(file, model_name = model_name, model_code = model_code,
stanc_ret = NULL, boost_lib = boost_lib, eigen_lib = eigen_lib,
save_dso = save_dso, verbose = verbose)
1: stan(file = "8schools.stan", data = schools_dat)
Or if I run
fx <- inline::cxxfunction( signature(x = "integer", y = "numeric" ) , 'return ScalarReal( INTEGER(x)[0] * REAL(y)[0] ) ;' )
Warning message:
In system(cmd) : 'make' not found
ERROR(s) during compilation: source code errors or compiler configuration errors!
Program source:
1:
2: // includes from the plugin
3: #include <R.h>
4: #include <Rdefines.h>
5: #include <R_ext/Error.h>
6:
7:
8: // user includes
9:
10:
11: // declarations
12: extern "C" {
13: SEXP file19ac31804fd9( SEXP x, SEXP y) ;
14: }
15:
16: // definition
17:
18: SEXP file19ac31804fd9( SEXP x, SEXP y ){
19: return ScalarReal( INTEGER(x)[0] * REAL(y)[0] ) ;
20: Rf_warning("your C++ program does not return anything");
21: return R_NilValue ;
22: }
23:
24:
Error in compileCode(f, code, language = language, verbose = verbose) :
Compilation ERROR, function(s)/method(s) not created! Warning message:
In system(cmd) : 'make' not found
In addition: Warning message:
In system(cmd, intern = !verbose) :
running command 'C:/PROGRA~1/R/R-35~1.3/bin/x64/R CMD SHLIB file19ac31804fd9.cpp 2> file19ac31804fd9.cpp.err.txt' had status 1
Could someone help me out please?
Thanks,
S