Suppressing mcmc samples in Quarto?

Interfaces CmdStan
1

I am using cmdstan sample() command in a Quarto document. I just do not want the samples chains, warnings etc. to appear in the document. How can I do that?

2

I don’t know if it is the best way to do it, but I typically add include = FALSE to the start of the code chunk. Then, if I still want the sample() command to appear in the document (without all the other messages and warnings), I add a duplicate code chunk with eval = FALSE.

3

If you’re using cmdstanpy (not clear from your original post) you can clear out these logging messages by

import cmdstanpy, logging
cmdstanpy.utils.get_logger().setLevel(logging.ERROR)
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4

You can set #| output = false for that chunk.

See the Quarto documentation here: Quarto - Execution Options

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