[this time updating everything with conda update --all solved it…sorry for the noise]
I’m having an issue with pystan on the mac that I can’t seem to debug. I tried a few small examples, and it seemed to work, and then other examples it would hang after sampling. I found this example which hangs: GitHub - fonnesbeck/stan_workshop_2016: Bayesian Modeling using Stan in R (May/June 2016)
In trying to figure out the issue, I made a self-contained version here: teststan_jan27_2018.py · GitHub
which hangs somewhere around N=100 (sometimes 90, sometimes 100, not always the same). It runs, and prints the following to the terminal:
…
Iteration: 600 / 1000 [ 60%] (Sampling)
Iteration: 700 / 1000 [ 70%] (Sampling)
Iteration: 800 / 1000 [ 80%] (Sampling)
Iteration: 900 / 1000 [ 90%] (Sampling)
Iteration: 1000 / 1000 [100%] (Sampling)Elapsed Time: 0.022963 seconds (Warm-up)
0.020337 seconds (Sampling)
0.0433 seconds (Total)
and then simply hangs. The smaller data, say N=10 or N=30, runs nearly instantly. I’m not sure even how to debug this problem. Can anyone reproduce it? Any steps I can take to figure it out?
thanks!
Operating System: Sierra 10.12.6
Python Version: Python 3.6.1 |Anaconda custom (64-bit)
Interface Version: pystan._version= ‘2.17.1.0’
Compiler/Toolkit: gcc