Hello,
I’ve been using Rstan on my Mac, but I cannot get it working on my Windows 10 laptop. The installation proceeds without error and I confirmed that the R build tools are installed. However, when running any Stan model, I get an error. My colleagues are having the same issue on their Windows laptop (while they are able to use rstan on their Mac). We spent a couple of days trying to troubleshoot without success. Error and installation details are below.
Error:
Error in compileCode(f, code, language = language, verbose = verbose) :
Compilation ERROR, function(s)/method(s) not created! C:/RBuildTools/mingw64/bin/…/lib/gcc/x86_64-w64-mingw32/8.3.0/…/…/…/…/x86_64-w64-mingw32/bin/ld.exe: file2b046b957ecf.o:file2b046b957ecf.cpp:(.text+0x12ac): undefined reference to rstan::stan_fit::stan_fit(SEXPREC*, int)' C:/RBuildTools/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file2b046b957ecf.o:file2b046b957ecf.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D1Ev[_ZN3tbb8internal26task_scheduler_observer_v3D1Ev]+0x14): undefined reference to tbb::internal::task_scheduler_observer_v3::observe(bool)’
C:/RBuildTools/mingw64/bin/…/lib/gcc/x86_64-w64-mingw32/8.3.0/…/…/…/…/x86_64-w64-mingw32/bin/ld.exe: file2b046b957ecf.o:file2b046b957ecf.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D0Ev[_ZN3tbb8internal26task_scheduler_observer_v3D0Ev]+0x1c): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)’
C:/RBuildTools/mingw64/bin
In addition: Warning message:
In file.remove(c(unprocessed, processed)) :
cannot remove file ‘C:\Users\LUGUCC~1\AppData\Local\Temp\RtmpkPRqEc\file2b04bcf454b.stan’, reason ‘No such file or directory’
Error in sink(type = “output”) : invalid connection
Info related to installation:
- Operating System: Windows 10
- Rstan version: 2.21.1
- Output of devtools::session_info(“rstan”)
-
Session info ----------------------------------------
setting value
version R version 4.0.2 (2020-06-22)
os Windows 10 x64
system x86_64, mingw32
ui RStudio
language (EN)
collate English_United States.1252
ctype English_United States.1252
tz America/New_York
date 2020-07-17 -
Packages --------------------------------------------
! package * version date lib
assertthat 0.2.1 2019-03-21 [1]
backports 1.1.7 2020-05-13 [1]
BH 1.72.0-3 2020-01-08 [1]
callr 3.4.3 2020-03-28 [1]
checkmate 2.0.0 2020-02-06 [1]
cli 2.0.2 2020-02-28 [1]
colorspace 1.4-1 2019-03-18 [1]
crayon 1.3.4 2017-09-16 [1]
curl 4.3 2019-12-02 [1]
desc 1.2.0 2018-05-01 [1]
digest 0.6.25 2020-02-23 [1]
ellipsis 0.3.1 2020-05-15 [1]
evaluate 0.14 2019-05-28 [1]
fansi 0.4.1 2020-01-08 [1]
farver 2.0.3 2020-01-16 [1]
ggplot2 3.3.2 2020-06-19 [1]
glue 1.4.1 2020-05-13 [1]
gridExtra 2.3 2017-09-09 [1]
gtable 0.3.0 2019-03-25 [1]
inline 0.3.15 2018-05-18 [1]
isoband 0.2.2 2020-06-20 [1]
jsonlite 1.7.0 2020-06-25 [1]
labeling 0.3 2014-08-23 [1]
lattice 0.20-41 2020-04-02 [1]
lifecycle 0.2.0 2020-03-06 [1]
loo 2.3.1 2020-07-14 [1]
magrittr 1.5 2014-11-22 [1]
MASS 7.3-51.6 2020-04-26 [1]
Matrix 1.2-18 2019-11-27 [1]
matrixStats 0.56.0 2020-03-13 [1]
mgcv 1.8-31 2019-11-09 [1]
munsell 0.5.0 2018-06-12 [1]
nlme 3.1-148 2020-05-24 [1]
pillar 1.4.6 2020-07-10 [1]
pkgbuild 1.1.0 2020-07-13 [1]
pkgconfig 2.0.3 2019-09-22 [1]
pkgload 1.1.0 2020-05-29 [1]
praise 1.0.0 2015-08-11 [1]
prettyunits 1.1.1 2020-01-24 [1]
processx 3.4.3 2020-07-05 [1]
ps 1.3.3 2020-05-08 [1]
R6 2.4.1 2019-11-12 [1]
RColorBrewer 1.1-2 2014-12-07 [1]
Rcpp 1.0.5 2020-07-06 [1]
RcppEigen 0.3.3.7.0 2019-11-16 [1]
D RcppParallel 5.0.2 2020-06-24 [1]
rlang 0.4.6 2020-05-02 [1]
rprojroot 1.3-2 2018-01-03 [1]
rstan 2.21.1 2020-07-08 [1]
rstudioapi 0.11 2020-02-07 [1]
scales 1.1.1 2020-05-11 [1]
StanHeaders 2.21.0-5 2020-06-09 [1]
testthat 2.3.2 2020-03-02 [1]
tibble 3.0.2 2020-07-07 [1]
utf8 1.1.4 2018-05-24 [1]
V8 3.2.0 2020-06-19 [1]
vctrs 0.3.1 2020-06-05 [1]
viridisLite 0.3.0 2018-02-01 [1]
withr 2.2.0 2020-04-20 [1]
source
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[1] C:/Users/luguccioni/R/R-4.0.2/library
D – DLL MD5 mismatch, broken installation.
- Output of
writeLines(readLines(file.path(Sys.getenv("HOME"), ".R/Makevars")))
CXX14FLAGS=-O3 -march=corei7 -mtune=corei7
CXX14 = (BINPREF)g++ -m(WIN) -std=c++1y
CXX11FLAGS=-O3 -march=corei7 -mtune=corei7