Hi,
I recently installed rstan on a new arm Mac and then tried running a brms model - however the model doesn’t run and I get a compilation error:
Error in compileCode(f, code, language = language, verbose = verbose) :
In file included from :1:In file included from /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13:In file included from /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/RcppEigen/include/Eigen/Dense:1:In file included from /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/RcppEigen/include/Eigen/Core:82:In file included from /usr/local/opt/llvm/bin/…/include/c++/v1/new:90:In file included from /usr/local/opt/llvm/bin/…/include/c++/v1/exception:81:In file included from /usr/local/opt/llvm/bin/…/include/c++/v1/cstdlib:85:/usr/local/opt/llvm/bin/…/include/c++/v1/stdlib.h:97:15: fatal error: ‘stdlib.h’ file not found#include_next <stdlib.h>
I have virtually tried every suggestion I found online after googling this issue, have uninstalled and reinstalled xcode, have removed and when this didn’t work (as apparently it did for some people) re-added command line tools, etc. Unfortunately none of the previous suggestions worked for me.
Any help on this would be much appreciated!
In case it helps, below is my session info:
R version 4.1.3 (2022-03-10)
Platform: aarch64-apple-darwin20 (64-bit)
Running under: macOS Monterey 12.3Matrix products: default
LAPACK: /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/lib/libRlapack.dyliblocale:
[1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8attached base packages:
[1] stats graphics grDevices utils datasets methods baseother attached packages:
[1] ggpubr_0.4.0 summarytools_1.0.0 ltm_1.2-0 polycor_0.8-1 msm_1.6.9
[6] MASS_7.3-55 sjmisc_2.8.9 viridis_0.6.2 viridisLite_0.4.0 ggridges_0.5.3
[11] ggthemes_4.2.4 ggmcmc_1.5.1.1 RColorBrewer_1.1-2 devtools_2.4.3 usethis_2.1.5
[16] HDInterval_0.2.2 brms_2.16.3 Rcpp_1.0.8 forcats_0.5.1 stringr_1.4.0
[21] purrr_0.3.4 tidyr_1.2.0 tidyverse_1.3.1 afex_1.0-1 lme4_1.1-28
[26] Matrix_1.4-0 zip_2.2.0 dplyr_1.0.8 readr_2.1.2 broom_0.7.12
[31] Select_1.4 tibble_3.1.6 rstan_2.21.3 ggplot2_3.3.5 StanHeaders_2.21.0-7