Everyone’s telling me about this paper (arXiv, Jon Zelner, the authors). In addition to the epidemiology content, it’s a very careful study of ODE models being fit with MCMC and with ADVI.
- Chatzilena, A., van Leeuwen, E., Ratmann, O., Baguelin, M. and Demiris, N., 2019. Contemporary statistical inference for infectious disease models using Stan. arXiv preprint arXiv:1903.00423 .