Using install.packages("shinystan") , I obtained below error messages which may be due to dependency packages ‘igraph’ and ‘threejs’. I also tried to install ‘igraph’ and ‘threejs’ separately, but they do not work for R 4.0. I’m using Windows 10.
Very much appreciate if you could advise how to solve this problem.
compilation terminated.
make: *** [C:/PROGRA~1/R/R-TEST~1/etc/i386/Makeconf:217: feedback_arc_set.o] Error 1
ERROR: compilation failed for package 'igraph'
* removing 'C:/Users/Lin/Documents/R/win-library/testing/igraph'
Warning in install.packages :
installation of package ‘igraph’ had non-zero exit status
ERROR: dependency 'igraph' is not available for package 'threejs'
* removing 'C:/Users/Lin/Documents/R/win-library/testing/threejs'
Warning in install.packages :
installation of package ‘threejs’ had non-zero exit status
ERROR: dependency 'threejs' is not available for package 'shinystan'
* removing 'C:/Users/Lin/Documents/R/win-library/testing/shinystan'
Warning in install.packages :
installation of package ‘shinystan’ had non-zero exit status
Hello @lin.wang.idd.pasteur ,
Could you try to install version 3.0 and see if the problem persists? I’m currently developing this version on a windows 10 machine using R4.0 so it should be okay. You can install version 3.0 by using the following code:
if (!require("devtools")) {
install.packages("devtools")
}
devtools::install_github("stan-dev/shinystan", ref = "v3-alpha", build_vignettes = TRUE)
If you want to use the version of shinystan such as it is currently on CRAN you can add the argument old_version = TRUE in launch_shinystan().
Kind regards,
Duco
1 Like
Hi @ducoveen
Thank you for the suggestion. By trying to install version 3.0, I received below error message.
Installing 3 packages: threejs, RcppParallel, igraphhttps://cran.rstudio.com/bin/windows/contrib/4.0gcc8: https://cran.rstudio.com/bin/windows/contrib/4.0gcc8/PACKAGES ’
jonah
June 15, 2020, 2:07pm
4
It looks like the error has to do with installing the igraph package. I’m not sure what’s going on with igraph but maybe that’s a known issue that’s discussed elsewhere online?
Maybe it has to do with some specific version of the packages you use, the following is my session information that has everything working on windows 10 with R 4.0:
> devtools::session_info()
- Session info ----------------------------------------------------------------------------------------------------------------
setting value
version R version 4.0.0 (2020-04-24)
os Windows 10 x64
system x86_64, mingw32
ui RStudio
language (EN)
collate English_Netherlands.1252
ctype English_Netherlands.1252
tz Europe/Berlin
date 2020-06-16
- Packages --------------------------------------------------------------------------------------------------------------------
! package * version date lib source
assertthat 0.2.1 2019-03-21 [1] CRAN (R 4.0.0)
backports 1.1.7 2020-05-13 [1] CRAN (R 4.0.0)
base64enc 0.1-3 2015-07-28 [1] CRAN (R 4.0.0)
bayesplot * 1.7.2 2020-05-28 [1] CRAN (R 4.0.0)
callr 3.4.3 2020-03-28 [1] CRAN (R 4.0.0)
cli 2.0.2 2020-02-28 [1] CRAN (R 4.0.0)
colorspace 1.4-1 2019-03-18 [1] CRAN (R 4.0.0)
colourpicker 1.0 2017-09-27 [1] CRAN (R 4.0.0)
crayon 1.3.4 2017-09-16 [1] CRAN (R 4.0.0)
crosstalk 1.1.0.1 2020-03-13 [1] CRAN (R 4.0.0)
desc 1.2.0 2018-05-01 [1] CRAN (R 4.0.0)
devtools 2.3.0 2020-04-10 [1] CRAN (R 4.0.0)
digest 0.6.25 2020-02-23 [1] CRAN (R 4.0.0)
dplyr * 1.0.0 2020-05-29 [1] CRAN (R 4.0.0)
DT 0.13 2020-03-23 [1] CRAN (R 4.0.0)
dygraphs 1.1.1.6 2018-07-11 [1] CRAN (R 4.0.0)
ellipsis 0.3.1 2020-05-15 [1] CRAN (R 4.0.0)
fansi 0.4.1 2020-01-08 [1] CRAN (R 4.0.0)
fastmap 1.0.1 2019-10-08 [1] CRAN (R 4.0.0)
fs 1.4.1 2020-04-04 [1] CRAN (R 4.0.0)
generics 0.0.2 2018-11-29 [1] CRAN (R 4.0.0)
ggplot2 * 3.3.1 2020-05-28 [1] CRAN (R 4.0.0)
ggridges 0.5.2 2020-01-12 [1] CRAN (R 4.0.0)
glue 1.4.1 2020-05-13 [1] CRAN (R 4.0.0)
gridExtra 2.3 2017-09-09 [1] CRAN (R 4.0.0)
gtable 0.3.0 2019-03-25 [1] CRAN (R 4.0.0)
gtools 3.8.2 2020-03-31 [1] CRAN (R 4.0.0)
htmltools 0.4.0 2019-10-04 [1] CRAN (R 4.0.0)
htmlwidgets 1.5.1 2019-10-08 [1] CRAN (R 4.0.0)
httpuv 1.5.3.1 2020-05-26 [1] CRAN (R 4.0.0)
igraph 1.2.5 2020-03-19 [1] CRAN (R 4.0.0)
inline 0.3.15 2018-05-18 [1] CRAN (R 4.0.0)
later 1.1.0.1 2020-06-05 [1] CRAN (R 4.0.0)
D lattice 0.20-41 2020-04-02 [1] CRAN (R 4.0.0)
lifecycle 0.2.0 2020-03-06 [1] CRAN (R 4.0.0)
loo 2.2.0 2019-12-19 [1] CRAN (R 4.0.0)
magrittr 1.5 2014-11-22 [1] CRAN (R 4.0.0)
markdown 1.1 2019-08-07 [1] CRAN (R 4.0.0)
matrixStats 0.56.0 2020-03-13 [1] CRAN (R 4.0.0)
memoise 1.1.0 2017-04-21 [1] CRAN (R 4.0.0)
mime 0.9 2020-02-04 [1] CRAN (R 4.0.0)
miniUI 0.1.1.1 2018-05-18 [1] CRAN (R 4.0.0)
munsell 0.5.0 2018-06-12 [1] CRAN (R 4.0.0)
packrat 0.5.0 2018-11-14 [1] CRAN (R 4.0.0)
pillar 1.4.4 2020-05-05 [1] CRAN (R 4.0.0)
pkgbuild 1.0.8 2020-05-07 [1] CRAN (R 4.0.0)
pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.0.0)
pkgload 1.1.0 2020-05-29 [1] CRAN (R 4.0.0)
plyr 1.8.6 2020-03-03 [1] CRAN (R 4.0.0)
prettyunits 1.1.1 2020-01-24 [1] CRAN (R 4.0.0)
processx 3.4.2 2020-02-09 [1] CRAN (R 4.0.0)
promises 1.1.0 2019-10-04 [1] CRAN (R 4.0.0)
ps 1.3.3 2020-05-08 [1] CRAN (R 4.0.0)
purrr 0.3.4 2020-04-17 [1] CRAN (R 4.0.0)
R6 2.4.1 2019-11-12 [1] CRAN (R 4.0.0)
Rcpp 1.0.4.6 2020-04-09 [1] CRAN (R 4.0.0)
remotes 2.1.1 2020-02-15 [1] CRAN (R 4.0.0)
reshape2 1.4.4 2020-04-09 [1] CRAN (R 4.0.0)
rlang 0.4.6 2020-05-02 [1] CRAN (R 4.0.0)
rprojroot 1.3-2 2018-01-03 [1] CRAN (R 4.0.0)
rsconnect 0.8.16 2019-12-13 [1] CRAN (R 4.0.0)
rstan 2.19.3 2020-02-11 [1] CRAN (R 4.0.0)
rstudioapi 0.11 2020-02-07 [1] CRAN (R 4.0.0)
scales 1.1.1 2020-05-11 [1] CRAN (R 4.0.0)
sessioninfo 1.1.1 2018-11-05 [1] CRAN (R 4.0.0)
shiny * 1.4.0.2 2020-03-13 [1] CRAN (R 4.0.0)
shinyjs * 1.1 2020-01-13 [1] CRAN (R 4.0.0)
shinystan * 3.0.0 2020-06-16 [1] local
shinythemes 1.1.2 2018-11-06 [1] CRAN (R 4.0.0)
StanHeaders 2.21.0-3 2020-05-28 [1] CRAN (R 4.0.0)
stringi 1.4.6 2020-02-17 [1] CRAN (R 4.0.0)
stringr 1.4.0 2019-02-10 [1] CRAN (R 4.0.0)
testthat 2.3.2 2020-03-02 [1] CRAN (R 4.0.0)
threejs 0.3.3 2020-01-21 [1] CRAN (R 4.0.0)
tibble 3.0.1 2020-04-20 [1] CRAN (R 4.0.0)
tidyselect 1.1.0 2020-05-11 [1] CRAN (R 4.0.0)
usethis 1.6.1 2020-04-29 [1] CRAN (R 4.0.0)
vctrs 0.3.0 2020-05-11 [1] CRAN (R 4.0.0)
withr 2.2.0 2020-04-20 [1] CRAN (R 4.0.0)
xtable 1.8-4 2019-04-21 [1] CRAN (R 4.0.0)
xts 0.12-0 2020-01-19 [1] CRAN (R 4.0.0)
zoo 1.8-8 2020-05-02 [1] CRAN (R 4.0.0)
2 Likes
Thanks much @ducoveen ! I noticed that my R 4.0 is beta version. After updating to R 4.0.1, installation of shinystan works!
2 Likes