Problem with "brm"

Developers
1

When I use function “brm” my output is:

BlockquoteError in compileCode(f, code, language = language, verbose = verbose) :
C:/Rtools/mingw64/bin/…/lib/gcc/x86_64-w64-mingw32/8.3.0/…/…/…/…/x86_64-w64-mingw32/bin/ld.exe: C:/Users/39331/Documents/R/win-library/4.0/rstan/lib/x64/libStanServices.a(stan_fit.o):stan_fit.cpp:(.rdata$_ZZN5boost4math6detail9bessel_j0IeEET_S3_E2P1[ZZN5boost4math6detail9bessel_j0IeEET_S3_E2P1]+0x0): multiple definition of boost::math::detail::bessel_j0<long double>(long double)::P1'; file5e943de76984.o:file5e943de76984.cpp:(.data$_ZZN5boost4math6detail9bessel_j0IeEET_S3_E2P1[_ZZN5boost4math6detail9bessel_j0IeEET_S3_E2P1]+0x0): first defined hereC:/Rtools/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: C:/Users/39331/Documents/R/win-library/4.0/rstan/lib/x64/libStanServices.a(stan_fit.o):stan_fit.cpp:(.rdata$_ZZN5boost4math6detail9bessel_j0IeEET_S3_E2QC[_ZZN5boost4math6detail9bessel_j0IeEET_S3_E2QC]+0x0): multiple definition of boost::math::detail::bessel_j0(long double)::QC’; file5e943de76984.o:file5e943de76984
Inoltre: Warning message:
In system(paste(CXX, ARGS), ignore.stdout = TRUE, ignore.stderr = TRUE) :
'C:/Rtools/usr/mingw/bin/g++’ not found
Error in sink(type = “output”) : connessione non valida

Can you help to fix it? Thank you so much!

2

Hi Francesco,

Can you restart R, making sure that rstan doesn’t get loaded, and reinstall rstan and StanHeaders from source:

# Compile packages using all cores
Sys.setenv(MAKEFLAGS = paste0("-j",parallel::detectCores()))

remove.packages(c("StanHeaders","rstan"))
install.packages(c("StanHeaders","rstan"),type="source")
3

Now after all require/library packages output is similar to:

Errore: package or namespace load failed for ‘ggplot2’ in get(method, envir = home):
lazy-load database ‘C:/Users/39331/Documents/R/win-library/4.0/lifecycle/R/lifecycle.rdb’ is corrupt
Inoltre: Warning messages:
1: package ‘ggplot2’ was built under R version 4.0.5
2: In .registerS3method(fin[i, 1], fin[i, 2], fin[i, 3], fin[i, 4], :
restarting interrupted promise evaluation
3: In get(method, envir = home) :
restarting interrupted promise evaluation
4: In get(method, envir = home) : internal error -3 in R_decompress1

I restart my R but nothing

4

Can you reinstall ggplot2 and lifecycle?