I am 1 dependency away from building (or trying to at least) rstan on a PowerPC Mac. StanHeaders and others have been finally built, thanks to helpful suggestions here and on Git. The remaining obstacle is V8 dependency, which fails: V8 fails to build on PowerPC Mac with R 4.1.2 · Issue #132 · jeroen/V8 · GitHub
There are no easy solutions, from what I understand.
Does rstan require V8 for some essential reasons or some non-critical functionality? If the second, can it be bypassed? If yes, how to make it technically?
P. S. V8ppc exists but apparently does not support PowerPC Macs: Error: SDK "macosx" cannot be located. Is the OSX not supported? · Issue #114 · ibmruntimes/v8ppc · GitHub
One suggestion was given to me on Git and I am yet to try that: Please make a version for PowerPC Mac · Issue #1 · jeroen/build-v8-static · GitHub
However it is likely to fail, and homebrew as such is likely not to work on my system at all (I have 10.6 developer build, no binaries for it exist).
For 2.21 its not a critical part of rstan, for 2.26+ it will be required and can not be avoided (rstan will compile the Stan model with a Javascript Stan-to-C++ compiler).
Thank you. Could you advise how to compile Rstan without having V8 then? When I try install,packages, it R starts downloading V8 and building it, build fails due to lack of libv8, and Rstan doesn’t proceed.
I have found a patched version of Rstan on Github that does not require libv8, however it still fails to build:
Installing package into ‘/Users/svacchanda/Library/R/powerpc/4.1/library’
(as ‘lib’ is unspecified)
Warning in file(con, "r") :
cannot open file '/var/db/timezone/zoneinfo/+VERSION': No such file or directory
* installing *source* package ‘rstan’ ...
** using staged installation
** libs
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -pipe -Os -arch ppc -m32 -c Module.cpp -o Module.o
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I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -pipe -Os -arch ppc -m32 -c chains.cpp -o chains.o
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make: [chains.o] Error 127 (ignored)
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -pipe -Os -arch ppc -m32 -c init.cpp -o init.o
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make: [init.o] Error 127 (ignored)
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -pipe -Os -arch ppc -m32 -c misc.cpp -o misc.o
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make: [misc.o] Error 127 (ignored)
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -pipe -Os -arch ppc -m32 -c pointer-tools.cpp -o pointer-tools.o
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make: [pointer-tools.o] Error 127 (ignored)
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -pipe -Os -arch ppc -m32 -c sparse_extractors.cpp -o sparse_extractors.o
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I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -pipe -Os -arch ppc -m32 -c stan_fit_base.cpp -o stan_fit_base.o
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make: [stan_fit_base.o] Error 127 (ignored)
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -pipe -Os -arch ppc -m32 -c stan_fit_rccp.cpp -o stan_fit_rccp.o
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make: [stan_fit_rccp.o] Error 127 (ignored)
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -pipe -Os -arch ppc -m32 -c stanc.cpp -o stanc.o
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I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -pipe -Os -arch ppc -m32 -c stan/lang/ast_def.cpp -o stan/lang/ast_def.o
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I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -pipe -Os -arch ppc -m32 -c stan/lang/grammars/bare_type_grammar_inst.cpp -o stan/lang/grammars/bare_type_grammar_inst.o
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I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -pipe -Os -arch ppc -m32 -c stan/lang/grammars/block_var_decls_grammar_inst.cpp -o stan/lang/grammars/block_var_decls_grammar_inst.o
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I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -pipe -Os -arch ppc -m32 -c stan/lang/grammars/expression07_grammar_inst.cpp -o stan/lang/grammars/expression07_grammar_inst.o
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I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -pipe -Os -arch ppc -m32 -c stan/lang/grammars/expression_grammar_inst.cpp -o stan/lang/grammars/expression_grammar_inst.o
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I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -pipe -Os -arch ppc -m32 -c stan/lang/grammars/functions_grammar_inst.cpp -o stan/lang/grammars/functions_grammar_inst.o
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make: [stan/lang/grammars/functions_grammar_inst.o] Error 127 (ignored)
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -pipe -Os -arch ppc -m32 -c stan/lang/grammars/indexes_grammar_inst.cpp -o stan/lang/grammars/indexes_grammar_inst.o
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make: [stan/lang/grammars/indexes_grammar_inst.o] Error 127 (ignored)
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -pipe -Os -arch ppc -m32 -c stan/lang/grammars/local_var_decls_grammar_inst.cpp -o stan/lang/grammars/local_var_decls_grammar_inst.o
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I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -pipe -Os -arch ppc -m32 -c stan/lang/grammars/program_grammar_inst.cpp -o stan/lang/grammars/program_grammar_inst.o
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I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -pipe -Os -arch ppc -m32 -c stan/lang/grammars/semantic_actions_def.cpp -o stan/lang/grammars/semantic_actions_def.o
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I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -pipe -Os -arch ppc -m32 -c stan/lang/grammars/statement_2_grammar_inst.cpp -o stan/lang/grammars/statement_2_grammar_inst.o
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I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -pipe -Os -arch ppc -m32 -c stan/lang/grammars/statement_grammar_inst.cpp -o stan/lang/grammars/statement_grammar_inst.o
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I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -pipe -Os -arch ppc -m32 -c stan/lang/grammars/term_grammar_inst.cpp -o stan/lang/grammars/term_grammar_inst.o
/bin/sh: I/opt/local/Library/Frameworks/R.framework/Resources/include: No such file or directory
make: [stan/lang/grammars/term_grammar_inst.o] Error 127 (ignored)
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -pipe -Os -arch ppc -m32 -c stan/lang/grammars/whitespace_grammar_inst.cpp -o stan/lang/grammars/whitespace_grammar_inst.o
/bin/sh: I/opt/local/Library/Frameworks/R.framework/Resources/include: No such file or directory
make: [stan/lang/grammars/whitespace_grammar_inst.o] Error 127 (ignored)
-dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/opt/local/Library/Frameworks/R.framework/Resources/libppc -L/opt/local/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/ -o rstan.so Module.o chains.o init.o misc.o pointer-tools.o sparse_extractors.o stan_fit_base.o stan_fit_rccp.o stanc.o stan/lang/ast_def.o stan/lang/grammars/bare_type_grammar_inst.o stan/lang/grammars/block_var_decls_grammar_inst.o stan/lang/grammars/expression07_grammar_inst.o stan/lang/grammars/expression_grammar_inst.o stan/lang/grammars/functions_grammar_inst.o stan/lang/grammars/indexes_grammar_inst.o stan/lang/grammars/local_var_decls_grammar_inst.o stan/lang/grammars/program_grammar_inst.o stan/lang/grammars/semantic_actions_def.o stan/lang/grammars/statement_2_grammar_inst.o stan/lang/grammars/statement_grammar_inst.o stan/lang/grammars/term_grammar_inst.o stan/lang/grammars/whitespace_grammar_inst.o -F/opt/local/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
/bin/sh: -dynamiclib: command not found
make: *** [rstan.so] Error 127
ERROR: compilation failed for package ‘rstan’
* removing ‘/Users/svacchanda/Library/R/powerpc/4.1/library/rstan’
Warning message:
In i.p(...) :
installation of package ‘/var/folders/rD/rDeCM6SDHv8daLCecrRmrU+++TI/-Tmp-//RtmpjZwabD/file28167d4a38e0/rstan_2.21.2.tar.gz’ had non-zero exit status
>
I’ve made a fork of the rstan 2.21 source and removed the V8 stanc3-check dependency. You can install via:
remotes::install_github("andrjohns/rstan-1@no-v8-221")
I’ve verified that it works for me locally
1 Like
Thank you! I am trying it, and at the moment I get the same weird Error 127:
─ preparing ‘rstan’: (569ms)
✔ checking DESCRIPTION meta-information ...
─ cleaning src
✔ checking vignette meta-information ...
Warning in file(con, "r") :
cannot open file '/var/db/timezone/zoneinfo/+VERSION': No such file or directory
─ checking for LF line-endings in source and make files and shell scripts
─ checking for empty or unneeded directories (639ms)
─ looking to see if a ‘data/datalist’ file should be added
─ building ‘rstan_2.21.2.tar.gz’
Installing package into ‘/Users/svacchanda/Library/R/powerpc/4.1/library’
(as ‘lib’ is unspecified)
Warning in file(con, "r") :
cannot open file '/var/db/timezone/zoneinfo/+VERSION': No such file or directory
* installing *source* package ‘rstan’ ...
** using staged installation
** libs
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -I/opt/local/Library/Frameworks/R.framework/Resources/include -pipe -Os -arch ppc -m32 -c Module.cpp -o Module.o
/bin/sh: I/opt/local/Library/Frameworks/R.framework/Resources/include: No such file or directory
make: [Module.o] Error 127 (ignored)
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -I/opt/local/Library/Frameworks/R.framework/Resources/include -pipe -Os -arch ppc -m32 -c chains.cpp -o chains.o
/bin/sh: I/opt/local/Library/Frameworks/R.framework/Resources/include: No such file or directory
make: [chains.o] Error 127 (ignored)
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -I/opt/local/Library/Frameworks/R.framework/Resources/include -pipe -Os -arch ppc -m32 -c init.cpp -o init.o
/bin/sh: I/opt/local/Library/Frameworks/R.framework/Resources/include: No such file or directory
make: [init.o] Error 127 (ignored)
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -I/opt/local/Library/Frameworks/R.framework/Resources/include -pipe -Os -arch ppc -m32 -c misc.cpp -o misc.o
/bin/sh: I/opt/local/Library/Frameworks/R.framework/Resources/include: No such file or directory
make: [misc.o] Error 127 (ignored)
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -I/opt/local/Library/Frameworks/R.framework/Resources/include -pipe -Os -arch ppc -m32 -c pointer-tools.cpp -o pointer-tools.o
/bin/sh: I/opt/local/Library/Frameworks/R.framework/Resources/include: No such file or directory
make: [pointer-tools.o] Error 127 (ignored)
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -I/opt/local/Library/Frameworks/R.framework/Resources/include -pipe -Os -arch ppc -m32 -c sparse_extractors.cpp -o sparse_extractors.o
/bin/sh: I/opt/local/Library/Frameworks/R.framework/Resources/include: No such file or directory
make: [sparse_extractors.o] Error 127 (ignored)
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -I/opt/local/Library/Frameworks/R.framework/Resources/include -pipe -Os -arch ppc -m32 -c stan_fit_base.cpp -o stan_fit_base.o
/bin/sh: I/opt/local/Library/Frameworks/R.framework/Resources/include: No such file or directory
make: [stan_fit_base.o] Error 127 (ignored)
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -I/opt/local/Library/Frameworks/R.framework/Resources/include -pipe -Os -arch ppc -m32 -c stan_fit_rccp.cpp -o stan_fit_rccp.o
/bin/sh: I/opt/local/Library/Frameworks/R.framework/Resources/include: No such file or directory
make: [stan_fit_rccp.o] Error 127 (ignored)
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -I/opt/local/Library/Frameworks/R.framework/Resources/include -pipe -Os -arch ppc -m32 -c stanc.cpp -o stanc.o
/bin/sh: I/opt/local/Library/Frameworks/R.framework/Resources/include: No such file or directory
make: [stanc.o] Error 127 (ignored)
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -I/opt/local/Library/Frameworks/R.framework/Resources/include -pipe -Os -arch ppc -m32 -c stan/lang/ast_def.cpp -o stan/lang/ast_def.o
/bin/sh: I/opt/local/Library/Frameworks/R.framework/Resources/include: No such file or directory
make: [stan/lang/ast_def.o] Error 127 (ignored)
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -I/opt/local/Library/Frameworks/R.framework/Resources/include -pipe -Os -arch ppc -m32 -c stan/lang/grammars/bare_type_grammar_inst.cpp -o stan/lang/grammars/bare_type_grammar_inst.o
/bin/sh: I/opt/local/Library/Frameworks/R.framework/Resources/include: No such file or directory
make: [stan/lang/grammars/bare_type_grammar_inst.o] Error 127 (ignored)
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -I/opt/local/Library/Frameworks/R.framework/Resources/include -pipe -Os -arch ppc -m32 -c stan/lang/grammars/block_var_decls_grammar_inst.cpp -o stan/lang/grammars/block_var_decls_grammar_inst.o
/bin/sh: I/opt/local/Library/Frameworks/R.framework/Resources/include: No such file or directory
make: [stan/lang/grammars/block_var_decls_grammar_inst.o] Error 127 (ignored)
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -I/opt/local/Library/Frameworks/R.framework/Resources/include -pipe -Os -arch ppc -m32 -c stan/lang/grammars/expression07_grammar_inst.cpp -o stan/lang/grammars/expression07_grammar_inst.o
/bin/sh: I/opt/local/Library/Frameworks/R.framework/Resources/include: No such file or directory
make: [stan/lang/grammars/expression07_grammar_inst.o] Error 127 (ignored)
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -I/opt/local/Library/Frameworks/R.framework/Resources/include -pipe -Os -arch ppc -m32 -c stan/lang/grammars/expression_grammar_inst.cpp -o stan/lang/grammars/expression_grammar_inst.o
/bin/sh: I/opt/local/Library/Frameworks/R.framework/Resources/include: No such file or directory
make: [stan/lang/grammars/expression_grammar_inst.o] Error 127 (ignored)
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -I/opt/local/Library/Frameworks/R.framework/Resources/include -pipe -Os -arch ppc -m32 -c stan/lang/grammars/functions_grammar_inst.cpp -o stan/lang/grammars/functions_grammar_inst.o
/bin/sh: I/opt/local/Library/Frameworks/R.framework/Resources/include: No such file or directory
make: [stan/lang/grammars/functions_grammar_inst.o] Error 127 (ignored)
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -I/opt/local/Library/Frameworks/R.framework/Resources/include -pipe -Os -arch ppc -m32 -c stan/lang/grammars/indexes_grammar_inst.cpp -o stan/lang/grammars/indexes_grammar_inst.o
/bin/sh: I/opt/local/Library/Frameworks/R.framework/Resources/include: No such file or directory
make: [stan/lang/grammars/indexes_grammar_inst.o] Error 127 (ignored)
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -I/opt/local/Library/Frameworks/R.framework/Resources/include -pipe -Os -arch ppc -m32 -c stan/lang/grammars/local_var_decls_grammar_inst.cpp -o stan/lang/grammars/local_var_decls_grammar_inst.o
/bin/sh: I/opt/local/Library/Frameworks/R.framework/Resources/include: No such file or directory
make: [stan/lang/grammars/local_var_decls_grammar_inst.o] Error 127 (ignored)
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -I/opt/local/Library/Frameworks/R.framework/Resources/include -pipe -Os -arch ppc -m32 -c stan/lang/grammars/program_grammar_inst.cpp -o stan/lang/grammars/program_grammar_inst.o
/bin/sh: I/opt/local/Library/Frameworks/R.framework/Resources/include: No such file or directory
make: [stan/lang/grammars/program_grammar_inst.o] Error 127 (ignored)
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -I/opt/local/Library/Frameworks/R.framework/Resources/include -pipe -Os -arch ppc -m32 -c stan/lang/grammars/semantic_actions_def.cpp -o stan/lang/grammars/semantic_actions_def.o
/bin/sh: I/opt/local/Library/Frameworks/R.framework/Resources/include: No such file or directory
make: [stan/lang/grammars/semantic_actions_def.o] Error 127 (ignored)
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -I/opt/local/Library/Frameworks/R.framework/Resources/include -pipe -Os -arch ppc -m32 -c stan/lang/grammars/statement_2_grammar_inst.cpp -o stan/lang/grammars/statement_2_grammar_inst.o
/bin/sh: I/opt/local/Library/Frameworks/R.framework/Resources/include: No such file or directory
make: [stan/lang/grammars/statement_2_grammar_inst.o] Error 127 (ignored)
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -I/opt/local/Library/Frameworks/R.framework/Resources/include -pipe -Os -arch ppc -m32 -c stan/lang/grammars/statement_grammar_inst.cpp -o stan/lang/grammars/statement_grammar_inst.o
/bin/sh: I/opt/local/Library/Frameworks/R.framework/Resources/include: No such file or directory
make: [stan/lang/grammars/statement_grammar_inst.o] Error 127 (ignored)
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -I/opt/local/Library/Frameworks/R.framework/Resources/include -pipe -Os -arch ppc -m32 -c stan/lang/grammars/term_grammar_inst.cpp -o stan/lang/grammars/term_grammar_inst.o
/bin/sh: I/opt/local/Library/Frameworks/R.framework/Resources/include: No such file or directory
make: [stan/lang/grammars/term_grammar_inst.o] Error 127 (ignored)
I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/Users/svacchanda/Library/R/powerpc/4.1/library/Rcpp/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppEigen/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/BH/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/StanHeaders/include' -I'/Users/svacchanda/Library/R/powerpc/4.1/library/RcppParallel/include' -I/opt/local/include -I/opt/local/Library/Frameworks/R.framework/Resources/include -pipe -Os -arch ppc -m32 -c stan/lang/grammars/whitespace_grammar_inst.cpp -o stan/lang/grammars/whitespace_grammar_inst.o
/bin/sh: I/opt/local/Library/Frameworks/R.framework/Resources/include: No such file or directory
make: [stan/lang/grammars/whitespace_grammar_inst.o] Error 127 (ignored)
-dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/opt/local/Library/Frameworks/R.framework/Resources/lib -L/opt/local/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/ -o rstan.so Module.o chains.o init.o misc.o pointer-tools.o sparse_extractors.o stan_fit_base.o stan_fit_rccp.o stanc.o stan/lang/ast_def.o stan/lang/grammars/bare_type_grammar_inst.o stan/lang/grammars/block_var_decls_grammar_inst.o stan/lang/grammars/expression07_grammar_inst.o stan/lang/grammars/expression_grammar_inst.o stan/lang/grammars/functions_grammar_inst.o stan/lang/grammars/indexes_grammar_inst.o stan/lang/grammars/local_var_decls_grammar_inst.o stan/lang/grammars/program_grammar_inst.o stan/lang/grammars/semantic_actions_def.o stan/lang/grammars/statement_2_grammar_inst.o stan/lang/grammars/statement_grammar_inst.o stan/lang/grammars/term_grammar_inst.o stan/lang/grammars/whitespace_grammar_inst.o -F/opt/local/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
/bin/sh: -dynamiclib: command not found
make: *** [rstan.so] Error 127
ERROR: compilation failed for package ‘rstan’
* removing ‘/Users/svacchanda/Library/R/powerpc/4.1/library/rstan’
Warning message:
In i.p(...) :
installation of package ‘/var/folders/rD/rDeCM6SDHv8daLCecrRmrU+++TI/-Tmp-//Rtmp7uY7Rj/fileb08410b6d70e/rstan_2.21.2.tar.gz’ had non-zero exit status
I don’t understand why it cannot find include folder, since it exists with that path. Maybe the issue is that it uses I instead of -I, I am yet to find a setting to change to correct that.
I will update you once I solve this path issue.
@andrjohns I have solved the problem with error 127 and this time compilation went almost to completion, but failed on this:
ar -rs ../inst/lib//libStanServices.a stan_fit.o stan_fit_base.o
ar: creating archive ../inst/lib//libStanServices.a
installing to /Users/svacchanda/Library/R/powerpc/4.1/library/00LOCK-rstan/00new/rstan/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Warning message:
In file(con, "r") :
cannot open file '/var/db/timezone/zoneinfo/+VERSION': No such file or directory
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning in file(con, "r") :
cannot open file '/var/db/timezone/zoneinfo/+VERSION': No such file or directory
Error: package or namespace load failed for ‘rstan’:
.onLoad failed in loadNamespace() for 'rstan', details:
call: dyn.load(tbbmalloc_proxy, local = FALSE, now = TRUE)
error: unable to load shared object '/private/var/folders/rD/rDeCM6SDHv8daLCecrRmrU+++TI/-Tmp-/RtmpIprbyl/R.INSTALLb6525da2c990/rstan/':
dlopen(/private/var/folders/rD/rDeCM6SDHv8daLCecrRmrU+++TI/-Tmp-/RtmpIprbyl/R.INSTALLb6525da2c990/rstan/, 10): no suitable image found. Did find:
/private/var/folders/rD/rDeCM6SDHv8daLCecrRmrU+++TI/-Tmp-/RtmpIprbyl/R.INSTALLb6525da2c990/rstan/: not a file
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/Users/svacchanda/Library/R/powerpc/4.1/library/rstan’
Warning messages:
1: In readLines(old_path) :
incomplete final line found on '/Users/svacchanda/.R/Makevars'
2: In readLines(old_path) :
incomplete final line found on '/Users/svacchanda/.R/Makevars'
3: In i.p(...) :
installation of package ‘/var/folders/rD/rDeCM6SDHv8daLCecrRmrU+++TI/-Tmp-//Rtmps7IJqv/fileb60972a9c379/rstan_2.21.2.tar.gz’ had non-zero exit status
>
Please advise me what to try. Thanks to your help it almost succeeded.
@andrjohns A piece of somewhat good news: Rstan compiled through completion and installed. I downloaded your source to my machine, removed a call to unload tbbmalloc in zzz.R file that led to the error above, and that sorted installation.
However, when I tried to compile a simple test model, I got libtbb.dylib error:
[R.app GUI 1.72 (7847) powerpc-apple-darwin10.0.0d2]
[History restored from /Users/svacchanda/.Rapp.history]
> library(rstan)
Loading required package: StanHeaders
Loading required package: ggplot2
Need help getting started? Try the R Graphics Cookbook: https://r-graphics.org
rstan (Version 2.21.2, GitRev: 2e1f913d3ca3)
For execution on a local, multicore CPU with excess RAM we recommend calling
options(mc.cores = parallel::detectCores()).
To avoid recompilation of unchanged Stan programs, we recommend calling
rstan_options(auto_write = TRUE)
Warning message:
In file(con, "r") :
cannot open file '/var/db/timezone/zoneinfo/+VERSION': No such file or directory
> scode <- "
+ parameters {
+ real y[2];
+ }
+ model {
+ y[1] ~ normal(0, 1);
+ y[2] ~ double_exponential(0, 2);
+ }
+ "
> fit1 <- stan(model_code = scode, iter = 10, verbose = FALSE)
Error in dyn.load(libLFile) :
unable to load shared object '/var/folders/rD/rDeCM6SDHv8daLCecrRmrU+++TI/-Tmp-//RtmpnOlqOR/filed69511e8933e.so':
dlopen(/var/folders/rD/rDeCM6SDHv8daLCecrRmrU+++TI/-Tmp-//RtmpnOlqOR/filed69511e8933e.so, 6): Library not loaded: @rpath/libtbb.dylib
Referenced from: /var/folders/rD/rDeCM6SDHv8daLCecrRmrU+++TI/-Tmp-//RtmpnOlqOR/filed69511e8933e.so
Reason: image not found
Error in sink(type = "output") : invalid connection
>
Is there a way to resolve this?
Hi, could you please do me a favor and make it available on Github? I wanna work on bringing Stan into Macports, and I really need non-v8 branch for that.
If this is for adding rstan to MacPorts, then I’m not sure if creating a custom non-v8 branch is a good idea - since 2.21 is the last version of rstan where this will be possible, which is already very outdated
First of all, if you have any objections, I won’t bring it to Macports, but just use myself. I need it myself, it is just that I try to bring fixes and new ports for others, when possible. But Macports part can be easily dropped.
However, if you don’t object in principle, it is a common practice to have pegged version for older systems when the bleeding edge is not feasible to support anymore. It is done either via setting a version based on OS (so that the same port installs different versions) or via having a separate -legacy port. It is definitely preferable to have some functional version of a software rather than none at all. At the same time, newer OSs can have the latest release and/or -develop version tracking GitHub master.
If it’s pinned for the ppc arch only then it shouldn’t be an issue. The current CRAN rstan already had all of the V8 code removed in preparation for the 2.26 update, so all that was needed was removing the package from the Suggests requirements.
I’ve created the nov8-2.21 branch in the rstan repo that has these changes: GitHub - stan-dev/rstan at nov8-2.21
Additionally, if you already have all of the dependent libraries building except for V8, you should be able to use cmdstanr with the latest Stan release soon. Once I finish up this Math PR you could use cmdstanr with the cmdstan building against the versions of the library dependencies that you’ve got building through MacPorts
Awesome, thank you very much!
By the way, I have noticed that in few places compiler choice and even arch are hardcoded:
rstan/install.R at develop · stan-dev/rstan · GitHub (compiler and arch)
cmdstan/makefile at develop · stan-dev/cmdstan · GitHub (compiler)
Likely elsewhere too.
These are better to be fixed, if possible. We got 2 compilers and 5 archs on MacOS :)