Hello,
This is a crosspost from my github issue.
Whenever I attempt to compile any stan file in Rstan, I get the following error and my Rsession is aborted.
terminate called after throwing an instance of 'std::system_error'
what(): Invalid argument
Abort trap: 6
To get this error, I put the following stan code in example.stan
// The input data is a vector 'y' of length 'N'.
data {
int<lower=0> N;
vector[N] y;
}
// The parameters accepted by the model. Our model
// accepts two parameters 'mu' and 'sigma'.
parameters {
real mu;
real<lower=0> sigma;
}
// The model to be estimated. We model the output
// 'y' to be normally distributed with mean 'mu'
// and standard deviation 'sigma'.
model {
y ~ normal(mu, sigma);
}
Then, I call
rstan::stan_model(file = "example.stan")
Below is my sessionInfo:
R version 4.1.2 (2021-11-01)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Catalina 10.15.5
Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] rstan_2.21.3 ggplot2_3.3.5 StanHeaders_2.21.0-7
loaded via a namespace (and not attached):
[1] Rcpp_1.0.8 magrittr_2.0.2 tidyselect_1.1.1 munsell_0.5.0
[5] colorspace_2.0-3 R6_2.5.1 rlang_1.0.2 fansi_1.0.2
[9] dplyr_1.0.8 parallel_4.1.2 pkgbuild_1.3.0 grid_4.1.2
[13] gtable_0.3.0 loo_2.5.0 utf8_1.2.2 cli_3.2.0
[17] withr_2.5.0 matrixStats_0.61.0 ellipsis_0.3.2 RcppParallel_5.1.5
[21] tibble_3.1.6 lifecycle_1.0.1 crayon_1.5.0 processx_3.5.2
[25] gridExtra_2.3 purrr_0.3.4 callr_3.7.0 codetools_0.2-18
[29] ps_1.6.0 vctrs_0.3.8 inline_0.3.19 glue_1.6.2
[33] compiler_4.1.2 pillar_1.7.0 prettyunits_1.1.1 generics_0.1.2
[37] scales_1.1.1 stats4_4.1.2 pkgconfig_2.0.3
I’m not sure why this is happening because I know that rstan
was working on my machine before.
Any help is appreciated!
Eric.