Hi ,
I have been having issues installing RStan on a virtual machine.
Virtual machine:
- Windows 10 enterprise
- Version 1909
- 64-bit, x64 processor
R:
- 4.1.0
- 64-bit
RStudio:
- 1.4.1106
Instructions followed are based on Stan Installation Help
Configuring C++ Toolchain
-
Sys.getenv("BINPREF")returns"" - Installed Rtools40 64-bit from R tools link and saved at C:\rtools40:
- Added Rtools to the path variable using
writeLines('PATH="${RTOOLS40_HOME}\\usr\\bin;${PATH}"', con = "~/.Renviron") -
Sys.which("make")returns:"C::\\rtools40\\usr\\bin\\make.exe" - Confirmed I can install packages from source
- Completed the makevars configuration step
Installing RStan
- Installing RStan seems to work, but it returns a directory that has “local_” in front of my user account. This does not happen with my laptop
-
library(rstan)returns
Example Model
Please note that I removed the code output from lines 2:368 for both sets of model outputs to ensure the character limit was not breached. If you would like to see the full output please let me know.
example(stan_model, package = "rstan", run.dontrun = TRUE) returns
stn_md> stancode <- 'data {real y_mean;} parameters {real y;} model {y ~ normal(y_mean,1);}'
stn_md> mod <- stan_model(model_code = stancode, verbose = TRUE)
TRANSLATING MODEL '73fc79f8b1915e8208c736914c86d1a1' FROM Stan CODE TO C++ CODE NOW.
successful in parsing the Stan model '73fc79f8b1915e8208c736914c86d1a1'.
Error in open.connection(con, open = mode) :
Could not resolve host: github.com
In addition: Warning message:
In system(paste(CXX, ARGS), ignore.stdout = TRUE, ignore.stderr = TRUE) :
'C:/rtools40/usr/mingw_/bin/g++' not found
COMPILING THE C++ CODE FOR MODEL '73fc79f8b1915e8208c736914c86d1a1' NOW.
OS: x86_64, mingw32; rstan: 2.21.2; Rcpp: 1.0.6; inline: 0.3.19
>> setting environment variables:
LOCAL_LIBS = "C:/Program Files/R/R-4.1.0/library/rstan/lib/x64/libStanServices.a" -L"C:/Program Files/R/R-4.1.0/library/StanHeaders/libs/x64" -lStanHeaders -L"C:/Program Files/R/R-4.1.0/library/RcppParallel/lib/x64" -ltbb
PKG_CPPFLAGS = -I"C:/Program Files/R/R-4.1.0/library/Rcpp/include/" -I"C:/Program Files/R/R-4.1.0/library/RcppEigen/include/" -I"C:/Program Files/R/R-4.1.0/library/RcppEigen/include/unsupported" -I"C:/Program Files/R/R-4.1.0/library/BH/include" -I"C:/Program Files/R/R-4.1.0/library/StanHeaders/include/src/" -I"C:/Program Files/R/R-4.1.0/library/StanHeaders/include/" -I"C:/Program Files/R/R-4.1.0/library/RcppParallel/include/" -I"C:/Program Files/R/R-4.1.0/library/rstan/include" -DEIGEN_NO_DEBUG -DBOOST_DISABLE_ASSERTS -DBOOST_PENDING_INTEGER_LOG2_HPP -DSTAN_THREADS -DBOOST_NO_AUTO_PTR -include "C:/Program Files/R/R-4.1.0/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp" -std=c++1y
>> Program source :
1 :
369 : }
make cmd is
make -f "C:/PROGRA~1/R/R-41~1.0/etc/x64/Makeconf" -f "C:/PROGRA~1/R/R-41~1.0/share/make/winshlib.mk" -f "//WWG00M.ROOTDOM.NET/BFS-HOME/t8ciabn-R0328854/.R/Makevars.win" CXX='$(CXX14) $(CXX14STD)' CXXFLAGS='$(CXX14FLAGS)' CXXPICFLAGS='$(CXX14PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX14LDFLAGS)' SHLIB_LD='$(SHLIB_CXX14LD)' SHLIB="file185c28a45681.dll" WIN=64 TCLBIN=64 OBJECTS="file185c28a45681.o"
make would use
make: *** No rule to make target 'file185c28a45681.o', needed by 'file185c28a45681.dll'. Stop.
ERROR(s) during compilation: source code errors or compiler configuration errors!
Program source:
1:
369: }
Compilation ERROR, function(s)/method(s) not created!
Error in compileCode(f, code, language = language, verbose = verbose) :
make: *** No rule to make target 'file185c28a45681.o', needed by 'file185c28a45681.dll'. Stop.
Also, I noted that Sys.getenv("HOME") returns "\\\\WWG00M.ROOTDOM.NET\\BFS-HOME\\*username*-R0328854".
Any help you can provide would be greatly appreciated.
Thanks.