HELP CMDstan installation problems

please I encountered this error while installing cdmstan on my computer using R 4.1.3

if ! [[ mingw32-make.exe =~ mingw32 ]]; then
echo “ERROR: Please use mingw32-make on Windows to build the Intel TBB library.”;
echo “This is packaged with RTools, for example.”;
exit 1;
fi

That’s not an error, it just gets printed as part of the installation process. Do you receive any errors when you run a model?

Thank you, I will run the installation again and a sample model and message you after its done. Thanks a lot @andrjohns

@andrjohns

I tried installing using installcmdstan()

the following errors showed up

ar: creating stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_cvodes.a
ar: creating stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_idas.a
ar: creating stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_kinsol.a
band/sunmatrix_band.o stan/lib/stan_math/lib/sun’cscript’ is not recognized as an internal or external command,
operable program or batch file.
stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_version.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nonlinearsolver.‘cscript’ is not recognized as an internal or external command,
operable program or batch file.
…/tbb_2020.3/build/common.inc:81: *** Architecture not detected. Stop.
mingw32-make.exe: *** [stan/lib/stan_math/make/libraries:173: stan/lib/stan_math/lib/tbb/tbbmalloc.def] Error 2
mingw32-make.exe: *** Waiting for unfinished jobs…
o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_futils.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_matrix.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunmatrix/band/sunmatrix_band.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunmatrix/dense/sunmatrix_dense.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunlinsol/band/sunlinsol_band.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunlinsol/dense/sunlinsol_dense.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunnonlinsol/newton/sunnonlinsol_newton.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.o
ar -rs stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_kinsol.a stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_io.o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_spils.o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_ls.o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol.o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_bbdpre.o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_direct.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_dense.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nvector_senswrapper.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nvector.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_context.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_memory.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_math.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_linearsolver.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_iterative.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_direct.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_band.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_version.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nonlinearsolver.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_futils.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_matrix.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunmatrix/band/sunmatrix_band.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunmatrix/dense/sunmatrix_dense.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunlinsol/band/sunlinsol_band.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunlinsol/dense/sunlinsol_dense.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunnonlinsol/newton/sunnonlinsol_newton.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.o
tbb_root=“…/tbb_2020.3” CXX=“g++” CC=“gcc” LDFLAGS='-Wl,-L,“C:/Users/JERRY B ZAKARI/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb” -Wl,-rpath,“C:/Users/JERRY B ZAKARI/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb” ’ ‘mingw32-make.exe’ -C “stan/lib/stan_math/lib/tbb” -r -f “C:/Users/JERRY B ZAKARI/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb_2020.3/build/Makefile.tbbmalloc” compiler=gcc cfg=release stdver=c++1y malloc CXXFLAGS="-Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation "
mingw32-make[1]: Entering directory ‘C:/Users/JERRY B ZAKARI/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb’
mingw32-make[1]: Leaving directory ‘C:/Users/JERRY B ZAKARI/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb’

@andrjohns

I tried running the example model

file ← file.path(cmdstan_path(), “examples”, “bernoulli”, “bernoulli.stan”)
mod ← cmdstan_model(file)

And this was what it gave me

Compiling Stan program…
INFO: Could not find files for the given pattern(s).

INFO: Could not find files for the given pattern(s).

‘cscript’ is not recognized as an internal or external command,
operable program or batch file.

‘cscript’ is not recognized as an internal or external command,
operable program or batch file.

…/tbb_2020.3/build/common.inc:81: *** Architecture not detected. Stop.

mingw32-make.exe: *** [stan/lib/stan_math/make/libraries:173: stan/lib/stan_math/lib/tbb/tbbmalloc.def] Error 2

Error: An error occured during compilation! See the message above for more information.

Can you post the outputs from:

sessionInfo()
Sys.getenv("PATH")

@andrjohns

Alright, here is

sessionInfo()

R version 4.1.3 (2022-03-10)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 8.1 x64 (build 9600)

Matrix products: default

locale:
[1] LC_COLLATE=English_South Africa.1252
[2] LC_CTYPE=English_South Africa.1252
[3] LC_MONETARY=English_South Africa.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_South Africa.1252

attached base packages:
[1] stats graphics grDevices utils datasets
[6] methods base

loaded via a namespace (and not attached):
[1] Rcpp_1.0.9 mvtnorm_1.1-3
[3] lattice_0.20-45 prettyunits_1.1.1
[5] ps_1.6.0 rprojroot_2.0.3
[7] assertthat_0.2.1 utf8_1.2.2
[9] R6_2.5.1 rethinking_2.21
[11] backports_1.4.1 stats4_4.1.3
[13] coda_0.19-4 ggplot2_3.3.6
[15] pillar_1.8.0 rlang_1.0.3
[17] rstudioapi_0.13 callr_3.7.1
[19] Matrix_1.4-1 checkmate_2.1.0
[21] desc_1.4.1 devtools_2.4.3
[23] loo_2.5.1 munsell_0.5.0
[25] compiler_4.1.3 xfun_0.30
[27] rstan_2.21.7 pkgconfig_2.0.3
[29] pkgbuild_1.3.1 shape_1.4.6
[31] tidyselect_1.1.2 tibble_3.1.8
[33] tensorA_0.36.2 gridExtra_2.3
[35] codetools_0.2-18 matrixStats_0.62.0
[37] fansi_1.0.3 withr_2.5.0
[39] crayon_1.5.1 dplyr_1.0.8
[41] brio_1.1.3 MASS_7.3-56
[43] grid_4.1.3 distributional_0.3.0
[45] gtable_0.3.0 lifecycle_1.0.1
[47] DBI_1.1.3 magrittr_2.0.2
[49] posterior_1.3.0 StanHeaders_2.26.13
[51] scales_1.2.0 RcppParallel_5.1.5
[53] cli_3.3.0 cachem_1.0.6
[55] farver_2.1.1 remotes_2.4.2
[57] fs_1.5.2 testthat_3.1.3
[59] ellipsis_0.3.2 generics_0.1.3
[61] vctrs_0.4.1 tools_4.1.3
[63] glue_1.6.2 purrr_0.3.4
[65] pkgload_1.2.4 fastmap_1.1.0
[67] processx_3.7.0 abind_1.4-5
[69] parallel_4.1.3 inline_0.3.19
[71] colorspace_2.0-3 sessioninfo_1.2.2
[73] memoise_2.0.1 cmdstanr_0.5.3
[75] knitr_1.38 usethis_2.1.5

And here is

Sys.getenv(“PATH”)

[1] “C:\rtools40//usr//bin;C:\Program Files\R\R-4.1.3\bin\x64;C:\rtools40\usr\bin;C:\rtools40\mingw64\bin;C:\rtools40\usr\bin;C:\rtools40\mingw64\bin”

Thanks for your response

Have you modified the environment variables in your system? Your PATH environment variable is missing a lot of key entries.

You need to update your PATH environment variable to include the following entries:

C:\Windows\system32
C:\Windows
C:\Windows\System32\Wbem

If you’re not sure how to change environment variables, you can follow the instructions for Windows here: https://www.java.com/en/download/help/path.html

1 Like

Yes I did modify it while trying to install at first, and it was bad judgement on my part since I didnt know what I was doing exactly, just got advice from some non expert like me, but I changed it to what you asked, this is what it shows now

Sys.getenv(“PATH”)

[1] “C:\rtools40//usr//bin;C:\Program Files\R\R-4.1.3\bin\x64;C:\Windows;C:\Windows\system32;C:\Windows\System32\Wbem;C:\rtools40\usr\bin;C:\rtools40\mingw64\bin;C:\Windows;C:\Windows\system32;C:\Windows\System32\Wbem;C:\rtools40\usr\bin;C:\rtools40\mingw64\bin”

What happens now when you run install_cmdstan()?

@andrjohns I am Now working via powershell cause R is really slow on my computer sorry. this is the output now after retrying

PS C:\cmdstan-2.30.1> mingw32-make install-tbb
mingw32-make : INFO: Could not find files for the given pattern(s).
At line:1 char:1

  • mingw32-make install-tbb
  •   + CategoryInfo          : NotSpecified: (INFO: Could not...ven pattern(s).:String) [], RemoteException
      + FullyQualifiedErrorId : NativeCommandError
    
    

tbb_root=“…/tbb_2020.3” CXX=“g++” CC=“gcc” LDFLAGS='-Wl,-L,“C:/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb” -Wl,-rpath
,“C:/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb” ’ ‘C:/rtools40/mingw64/bin/mingw32-make’ -C “stan/lib/stan_math/lib/
tbb” -r -f “C:/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb_2020.3/build/Makefile.tbbmalloc” compiler=gcc cfg=release st
dver=c++1y malloc CXXFLAGS="-Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memac
cess -Wno-sized-deallocation "
mingw32-make[1]: Entering directory ‘C:/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb’
‘cscript’ is not recognized as an internal or external command,
operable program or batch file.
‘cscript’ is not recognized as an internal or external command,
operable program or batch file.
…/tbb_2020.3/build/common.inc:81: *** Architecture not detected. Stop.
mingw32-make[1]: Leaving directory ‘C:/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb’
mingw32-make: *** [stan/lib/stan_math/make/libraries:173: stan/lib/stan_math/lib/tbb/tbbmalloc.def] Error 2

@andrjohns Is it okay working via powershell or do I continue using R? I find its easier to build via powershell ? but I just did install_cmdstan() again. I will post the output shortly, takes my computer an hour plus on average.

@andrjohns Hello, here is the output from install_cmdstan(). Truncated beginning parts to not exceed the word limit

cmdstanr::install_cmdstan(overwrite=T,timeout=12000)

stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_version.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_version.o
g++ -pipe -m64 -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -D_USE_MATH_DEFINES -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nonlinearsolver.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nonlinearsolver.o
g++ -pipe -m64 -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -D_USE_MATH_DEFINES -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_futils.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_futils.o
g++ -pipe -m64 -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -D_USE_MATH_DEFINES -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_matrix.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_matrix.o
g++ -pipe -m64 -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -D_USE_MATH_DEFINES -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sunmatrix/band/sunmatrix_band.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sunmatrix/band/sunmatrix_band.o
g++ -pipe -m64 -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -D_USE_MATH_DEFINES -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sunmatrix/dense/sunmatrix_dense.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sunmatrix/dense/sunmatrix_dense.o
g++ -pipe -m64 -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -D_USE_MATH_DEFINES -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sunlinsol/band/sunlinsol_band.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sunlinsol/band/sunlinsol_band.o
g++ -pipe -m64 -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -D_USE_MATH_DEFINES -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sunlinsol/dense/sunlinsol_dense.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sunlinsol/dense/sunlinsol_dense.o
g++ -pipe -m64 -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -D_USE_MATH_DEFINES -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sunnonlinsol/newton/sunnonlinsol_newton.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sunnonlinsol/newton/sunnonlinsol_newton.o
g++ -pipe -m64 -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -D_USE_MATH_DEFINES -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.o
g++ -pipe -m64 -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -D_USE_MATH_DEFINES -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_nls.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_nls.o
g++ -pipe -m64 -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -D_USE_MATH_DEFINES -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_nls_sim.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_nls_sim.o
g++ -pipe -m64 -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -D_USE_MATH_DEFINES -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_ls.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_ls.o
g++ -pipe -m64 -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -D_USE_MATH_DEFINES -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas.o
g++ -pipe -m64 -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -D_USE_MATH_DEFINES -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_bbdpre.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_bbdpre.o
g++ -pipe -m64 -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -D_USE_MATH_DEFINES -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_nls_stg.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_nls_stg.o
g++ -pipe -m64 -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -D_USE_MATH_DEFINES -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idaa_io.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idaa_io.o
g++ -pipe -m64 -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -D_USE_MATH_DEFINES -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_direct.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_direct.o
g++ -pipe -m64 -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -D_USE_MATH_DEFINES -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_io.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_io.o
g++ -pipe -m64 -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -D_USE_MATH_DEFINES -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idaa.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idaa.o
g++ -pipe -m64 -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -D_USE_MATH_DEFINES -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_ic.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_ic.o
g++ -pipe -m64 -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -D_USE_MATH_DEFINES -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_spils.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/idas/idas_spils.o
g++ -pipe -m64 -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -D_USE_MATH_DEFINES -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_io.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_io.o
g++ -pipe -m64 -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -D_USE_MATH_DEFINES -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_spils.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_spils.o
g++ -pipe -m64 -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -D_USE_MATH_DEFINES -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_ls.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_ls.o
g++ -pipe -m64 -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -D_USE_MATH_DEFINES -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol.o
g++ -pipe -m64 -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -D_USE_MATH_DEFINES -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_bbdpre.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_bbdpre.o
g++ -pipe -m64 -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -D_USE_MATH_DEFINES -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_direct.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_direct.o
if ! [[ mingw32-make.exe =~ mingw32 ]]; then
echo “ERROR: Please use mingw32-make on Windows to build the Intel TBB library.”;
echo “This is packaged with RTools, for example.”;
exit 1;
fi
touch stan/lib/stan_math/lib/tbb/tbb-make-check

— Compiling the main object file. This might take up to a minute. —
g++ -std=c++1y -m64 -D_REENTRANT -Wall -Wno-unused-function -Wno-uninitialized -Wno-unused-but-set-variable -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-attributes -Wno-ignored-attributes -I stan/lib/stan_math/lib/tbb_2020.3/include -O3 -I src -I stan/src -I lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.3.9 -I stan/lib/stan_math/lib/boost_1.78.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -D_USE_MATH_DEFINES -DBOOST_DISABLE_ASSERTS -c -o src/cmdstan/main.o src/cmdstan/main.cpp

— Compiling pre-compiled header. This might take a few seconds. —
g++ -std=c++1y -m64 -D_REENTRANT -Wall -Wno-unused-function -Wno-uninitialized -Wno-unused-but-set-variable -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-attributes -Wno-ignored-attributes -I stan/lib/stan_math/lib/tbb_2020.3/include -O3 -I src -I stan/src -I lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.3.9 -I stan/lib/stan_math/lib/boost_1.78.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -D_USE_MATH_DEFINES -DBOOST_DISABLE_ASSERTS -c stan/src/stan/model/model_header.hpp -o stan/src/stan/model/model_header.hpp.gch
g++ -std=c++1y -m64 -D_REENTRANT -Wall -Wno-unused-function -Wno-uninitialized -Wno-unused-but-set-variable -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-attributes -Wno-ignored-attributes -I stan/lib/stan_math/lib/tbb_2020.3/include -O3 -I src -I stan/src -I lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.3.9 -I stan/lib/stan_math/lib/boost_1.78.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -D_USE_MATH_DEFINES -DBOOST_DISABLE_ASSERTS -c -fvisibility=hidden -o bin/cmdstan/stansummary.o -static-libgcc -static-libstdc++ -Wl,-L,“C:/Users/JERRY B ZAKARI/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb” -Wl,-rpath,“C:/Users/JERRY B ZAKARI/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb” src/cmdstan/stansummary.cpp
g++ -std=c++1y -m64 -D_REENTRANT -Wall -Wno-unused-function -Wno-uninitialized -Wno-unused-but-set-variable -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-attributes -Wno-ignored-attributes -I stan/lib/stan_math/lib/tbb_2020.3/include -O3 -I src -I stan/src -I lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.3.9 -I stan/lib/stan_math/lib/boost_1.78.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -D_USE_MATH_DEFINES -DBOOST_DISABLE_ASSERTS -c -fvisibility=hidden -o bin/cmdstan/print.o -static-libgcc -static-libstdc++ -Wl,-L,“C:/Users/JERRY B ZAKARI/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb” -Wl,-rpath,“C:/Users/JERRY B ZAKARI/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb” src/cmdstan/print.cpp
g++ -std=c++1y -m64 -D_REENTRANT -Wall -Wno-unused-function -Wno-uninitialized -Wno-unused-but-set-variable -Wno-unused-variable -Wno-sign-compare -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-attributes -Wno-ignored-attributes -I stan/lib/stan_math/lib/tbb_2020.3/include -O3 -I src -I stan/src -I lib/rapidjson_1.1.0/ -I lib/CLI11-1.9.1/ -I stan/lib/stan_math/ -I stan/lib/stan_math/lib/eigen_3.3.9 -I stan/lib/stan_math/lib/boost_1.78.0 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -D_USE_MATH_DEFINES -DBOOST_DISABLE_ASSERTS -c -fvisibility=hidden -o bin/cmdstan/diagnose.o -static-libgcc -static-libstdc++ -Wl,-L,“C:/Users/JERRY B ZAKARI/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb” -Wl,-rpath,“C:/Users/JERRY B ZAKARI/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb” src/cmdstan/diagnose.cpp
ar -rs stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_nvecserial.a stan/lib/stan_math/lib/sundials_6.1.1/src/nvector/serial/nvector_serial.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_math.o
ar: creating stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_nvecserial.a
ar -rs stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_cvodes.a stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_nls_stg1.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_nls_sim.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_ls.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodea_io.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_spils.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_bandpre.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_bbdpre.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_nls_stg.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodea.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_io.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_direct.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_diag.o stan/lib/stan_math/lib/sundials_6.1.1/src/cvodes/cvodes_nls.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_dense.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nvector_senswrapper.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nvector.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_context.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_memory.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nonlinearsolver.ar: creating stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_idas.a
o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_futils.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_matrix.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunmatrix/band/sunmatrix_band.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunmatrix/dense/sunmatrix_dense.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunlinsol/band/sunlinsol_band.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunlinsol/dense/sunlinsol_dense.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunnonlinsol/newton/sunnonlinsol_newton.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.o
ar -rs stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_kinsol.a stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_io.o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_spils.o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_ls.o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol.o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_bbdpre.o stan/lib/stan_math/lib/sundials_6.1.1/src/kinsol/kinsol_direct.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_dense.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nvector_senswrapper.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nvector.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_context.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_memory.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_math.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_linearsolver.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_iterative.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_direct.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_band.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_version.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_nonlinearsolver.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_futils.o stan/lib/stan_math/lib/sundials_6.1.1/src/sundials/sundials_matrix.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunmatrix/band/sunmatrix_band.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunmatrix/dense/sunmatrix_dense.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunlinsol/band/sunlinsol_band.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunlinsol/dense/sunlinsol_dense.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunnonlinsol/newton/sunnonlinsol_newton.o stan/lib/stan_math/lib/sundials_6.1.1/src/sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.o
ar: creating stan/lib/stan_math/lib/sundials_6.1.1/lib/libsundials_kinsol.a
tbb_root=“…/tbb_2020.3” CXX=“g++” CC=“gcc” LDFLAGS='-Wl,-L,“C:/Users/JERRY B ZAKARI/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb” -Wl,-rpath,“C:/Users/JERRY B ZAKARI/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb” ’ ‘mingw32-make.exe’ -C “stan/lib/stan_math/lib/tbb” -r -f “C:/Users/JERRY B ZAKARI/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb_2020.3/build/Makefile.tbbmalloc” compiler=gcc cfg=release stdver=c++1y malloc CXXFLAGS="-Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation "
mingw32-make[1]: Entering directory ‘C:/Users/JERRY B ZAKARI/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb’
g++ -c -MMD -O2 -DUSE_WINTHREAD -D_WIN32_WINNT=0x0502 -DMINGW_HAS_SECURE_API=1 -D__MSVCRT_VERSION__=0x0700 -msse -mthreads -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -fno-rtti -fno-exceptions -D__TBBMALLOC_BUILD=1 -Wno-parentheses -Wno-uninitialized -Wno-non-virtual-dtor -I…/tbb_2020.3/src -I…/tbb_2020.3/src/rml/include -I…/tbb_2020.3/include -I…/tbb_2020.3/src/tbbmalloc -I…/tbb_2020.3/src/tbbmalloc …/tbb_2020.3/src/tbbmalloc/backend.cpp
g++ -c -MMD -O2 -DUSE_WINTHREAD -D_WIN32_WINNT=0x0502 -DMINGW_HAS_SECURE_API=1 -D__MSVCRT_VERSION__=0x0700 -msse -mthreads -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -fno-rtti -fno-exceptions -D__TBBMALLOC_BUILD=1 -Wno-parentheses -Wno-uninitialized -Wno-non-virtual-dtor -I…/tbb_2020.3/src -I…/tbb_2020.3/src/rml/include -I…/tbb_2020.3/include -I…/tbb_2020.3/src/tbbmalloc -I…/tbb_2020.3/src/tbbmalloc …/tbb_2020.3/src/tbbmalloc/large_objects.cpp
g++ -c -MMD -O2 -DUSE_WINTHREAD -D_WIN32_WINNT=0x0502 -DMINGW_HAS_SECURE_API=1 -D__MSVCRT_VERSION__=0x0700 -msse -mthreads -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -fno-rtti -fno-exceptions -D__TBBMALLOC_BUILD=1 -Wno-parentheses -Wno-uninitialized -Wno-non-virtual-dtor -I…/tbb_2020.3/src -I…/tbb_2020.3/src/rml/include -I…/tbb_2020.3/include -I…/tbb_2020.3/src/tbbmalloc -I…/tbb_2020.3/src/tbbmalloc …/tbb_2020.3/src/tbbmalloc/backref.cpp
g++ -c -MMD -O2 -DUSE_WINTHREAD -D_WIN32_WINNT=0x0502 -DMINGW_HAS_SECURE_API=1 -D__MSVCRT_VERSION__=0x0700 -msse -mthreads -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -fno-rtti -fno-exceptions -D__TBBMALLOC_BUILD=1 -Wno-parentheses -Wno-uninitialized -Wno-non-virtual-dtor -I…/tbb_2020.3/src -I…/tbb_2020.3/src/rml/include -I…/tbb_2020.3/include -I…/tbb_2020.3/src/tbbmalloc -I…/tbb_2020.3/src/tbbmalloc …/tbb_2020.3/src/tbbmalloc/tbbmalloc.cpp
g++ -c -MMD -O2 -DUSE_WINTHREAD -D_WIN32_WINNT=0x0502 -DMINGW_HAS_SECURE_API=1 -D__MSVCRT_VERSION__=0x0700 -msse -mthreads -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -fno-rtti -fno-exceptions -D__TBBMALLOC_BUILD=1 -Wno-parentheses -Wno-uninitialized -Wno-non-virtual-dtor -o itt_notify_malloc.o -I…/tbb_2020.3/src -I…/tbb_2020.3/src/rml/include -I…/tbb_2020.3/include …/tbb_2020.3/src/tbb/itt_notify.cpp
cmd /C cscript /nologo /E:jscript …/tbb_2020.3/build/version_info_windows.js gcc CScript Error: Windows Script Host access is disabled on this machine. Contact your administrator for details. “g++ -O2 -DUSE_WINTHREAD -D_WIN32_WINNT=0x0502 -DMINGW_HAS_SECURE_API=1 -D__MSVCRT_VERSION__=0x0700 -msse -mthreads -Wall -Wno-unknown-warning-option -Wno-deprecated-copy -Wno-missing-attributes -Wno-class-memaccess -Wno-sized-deallocation -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -std=c++1y -I…/tbb_2020.3/src -I…/tbb_2020.3/src/rml/include -I…/tbb_2020.3/include” > version_string.ver
mingw32-make[1]: Leaving directory ‘C:/Users/JERRY B ZAKARI/Documents/.cmdstan/cmdstan-2.30.1/stan/lib/stan_math/lib/tbb’
mingw32-make[1]: *** […/tbb_2020.3/build/common_rules.inc:160: version_string.ver] Error 1
mingw32-make[1]: *** Deleting file ‘version_string.ver’
mingw32-make.exe: *** [stan/lib/stan_math/make/libraries:173: stan/lib/stan_math/lib/tbb/tbbmalloc.def] Error 2
mingw32-make.exe: *** Waiting for unfinished jobs…

Warning message:
There was a problem during installation. See the error message(s) above.

The important part of your error message is:

CScript Error: Windows Script Host access is disabled on this machine. Contact your administrator for details

You’ll need to ask your administrator (I’m assuming this is a work computer or similar?) to enable Windows Script Host access, which looks to be required by the Intel TBB (one of Stan’s dependencies) to build

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@andrjohns Hello,thank you for replying, sorry its my computer, I have no idea how that happened, is there a way to fix this? I will probably look up online now and try to fix it, what do I after I fix the host problem? Do I run the install_cmd () function again? Thanks a lot for your help I dont know anything about these things.

@andrjohns Thanks alot!!! It worked! My models now run. You saved me here man, I am really glad!

1 Like

@andrjohns I am attempting to use CMDstan integrated with cmdstanr in R/Rstudio.

I have worked through the first errors/issues, based on the other forum threads (OneDrive folder issue, etc.). Now I am having this same error message when my models attempt to compile. I have been following the threads and have been attempting some of the fixes. I updated my system environment path.

This is my work computer (federal agency), so I’m sure there are some permissions that I may not have and/or some other red tape in place, but I wanted to see if we could fix the issues before having to go the IT route.

I ran install_cmdstan(overwrite = TRUE); the full output is too long for this message, but I have included a couple of snippets below

"
The C++ toolchain required for CmdStan is setup properly!
trying URL ‘https://api.github.com/repos/stan-dev/cmdstan/releases/latest
downloaded 14 KB

  • Latest CmdStan release is v2.33.1
  • Installing CmdStan v2.33.1 in C:\Users{username}\OneDrive - {agency}\Documents/.cmdstan/cmdstan-2.33.1
  • Downloading cmdstan-2.33.1.tar.gz from GitHub…
  • Removing the existing installation of CmdStan…
    trying URL ‘https://github.com/stan-dev/cmdstan/releases/download/v2.33.1/cmdstan-2.33.1.tar.gz
    Content type ‘application/octet-stream’ length 51051295 bytes (48.7 MB)
    downloaded 48.5 MB

trying URL ‘https://github.com/stan-dev/cmdstan/releases/download/v2.33.1/cmdstan-2.33.1.tar.gz
Content type ‘application/octet-stream’ length 51051295 bytes (48.7 MB)
downloaded 48.7 MB

  • Download complete
  • Unpacking archive…
  • Building CmdStan binaries…
    INFO: Could not find files for the given pattern(s).

mingw32-make[1]: Entering directory ‘C:/Users/{username}\OneDrive - {agency}/Documents/.cmdstan/cmdstan-2.33.1/stan/lib/stan_math/lib/tbb’
‘cscript’ is not recognized as an internal or external command,
operable program or batch file.
‘cscript’ is not recognized as an internal or external command,
operable program or batch file.
mingw32-make[1]: Leaving directory ‘C:/Users/{username}\OneDrive - {agency}/Documents/.cmdstan/cmdstan-2.33.1/stan/lib/stan_math/lib/tbb’
…/tbb_2020.3/build/common.inc:81: *** Architecture not detected. Stop.
mingw32-make: *** [stan/lib/stan_math/make/libraries:173: stan/lib/stan_math/lib/tbb/tbbmalloc.def] Error 2
mingw32-make: *** Waiting for unfinished jobs…