H:/rtools40/usr/mingw_/bin/g++ not found

ChinyUgo · September 10, 2020, 5:51pm

Hello,
I did as you suggested.
The devtool is installed and attached is the output after calling
devtools::session_info(“rstan”)

ChinyUgo · September 10, 2020, 6:31pm

I tried running my code again and still same error message

andrjohns · September 11, 2020, 12:15am

Can you run devtools::session_info("rstan") in the console, not from markdown? I need to see the list of packages and their versions

ChinyUgo · September 11, 2020, 8:35am

devtools::session_info(“rstan”)

Session info ---------------------------------------------------------------------------------------------------
setting value
version R version 4.0.2 (2020-06-22)
os Windows 10 x64
system x86_64, mingw32
ui RStudio
language (EN)
collate English_United Kingdom.1252
ctype English_United Kingdom.1252
tz Europe/London
date 2020-09-11
Packages -------------------------------------------------------------------------------------------------------
! package * version date lib source
assertthat 0.2.1 2019-03-21 [1] CRAN (R 4.0.2)
backports 1.1.8 2020-06-17 [1] CRAN (R 4.0.2)
BH 1.72.0-3 2020-01-08 [1] CRAN (R 4.0.0)
callr 3.4.3 2020-03-28 [1] CRAN (R 4.0.2)
checkmate 2.0.0 2020-02-06 [1] CRAN (R 4.0.2)
cli 2.0.2 2020-02-28 [1] CRAN (R 4.0.2)
colorspace 1.4-1 2019-03-18 [1] CRAN (R 4.0.2)
crayon 1.3.4 2017-09-16 [1] CRAN (R 4.0.2)
curl 4.3 2019-12-02 [1] CRAN (R 4.0.2)
desc 1.2.0 2018-05-01 [1] CRAN (R 4.0.2)
digest 0.6.25 2020-02-23 [1] CRAN (R 4.0.2)
ellipsis 0.3.1 2020-05-15 [1] CRAN (R 4.0.2)
evaluate 0.14 2019-05-28 [1] CRAN (R 4.0.2)
fansi 0.4.1 2020-01-08 [1] CRAN (R 4.0.2)
farver 2.0.3 2020-01-16 [1] CRAN (R 4.0.2)
ggplot2 3.3.2 2020-06-19 [1] CRAN (R 4.0.2)
glue 1.4.1 2020-05-13 [1] CRAN (R 4.0.2)
gridExtra 2.3 2017-09-09 [1] CRAN (R 4.0.2)
gtable 0.3.0 2019-03-25 [1] CRAN (R 4.0.2)
inline 0.3.15 2018-05-18 [1] CRAN (R 4.0.2)
isoband 0.2.2 2020-06-20 [1] CRAN (R 4.0.2)
jsonlite 1.7.0 2020-06-25 [1] CRAN (R 4.0.2)
labeling 0.3 2014-08-23 [1] CRAN (R 4.0.0)
lattice 0.20-41 2020-04-02 [2] CRAN (R 4.0.2)
lifecycle 0.2.0 2020-03-06 [1] CRAN (R 4.0.2)
loo 2.3.1 2020-07-14 [1] CRAN (R 4.0.2)
magrittr 1.5 2014-11-22 [1] CRAN (R 4.0.2)
MASS 7.3-51.6 2020-04-26 [2] CRAN (R 4.0.2)
Matrix 1.2-18 2019-11-27 [2] CRAN (R 4.0.2)
matrixStats 0.56.0 2020-03-13 [1] CRAN (R 4.0.2)
mgcv 1.8-31 2019-11-09 [2] CRAN (R 4.0.2)
munsell 0.5.0 2018-06-12 [1] CRAN (R 4.0.2)
nlme 3.1-148 2020-05-24 [2] CRAN (R 4.0.2)
pillar 1.4.6 2020-07-10 [1] CRAN (R 4.0.2)
pkgbuild 1.1.0 2020-07-13 [1] CRAN (R 4.0.2)
pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.0.2)
pkgload 1.1.0 2020-05-29 [1] CRAN (R 4.0.2)
praise 1.0.0 2015-08-11 [1] CRAN (R 4.0.2)
prettyunits 1.1.1 2020-01-24 [1] CRAN (R 4.0.2)
processx 3.4.3 2020-07-05 [1] CRAN (R 4.0.2)
ps 1.3.3 2020-05-08 [1] CRAN (R 4.0.2)
R6 2.4.1 2019-11-12 [1] CRAN (R 4.0.2)
RColorBrewer 1.1-2 2014-12-07 [1] CRAN (R 4.0.0)
Rcpp 1.0.5 2020-07-06 [1] CRAN (R 4.0.2)
RcppEigen 0.3.3.7.0 2019-11-16 [1] CRAN (R 4.0.2)
D RcppParallel 5.0.2 2020-06-24 [1] CRAN (R 4.0.2)
rlang 0.4.6 2020-05-02 [1] CRAN (R 4.0.2)
rprojroot 1.3-2 2018-01-03 [1] CRAN (R 4.0.2)
rstan 2.21.2 2020-07-27 [1] CRAN (R 4.0.2)
rstudioapi 0.11 2020-02-07 [1] CRAN (R 4.0.2)
scales 1.1.1 2020-05-11 [1] CRAN (R 4.0.2)
StanHeaders 2.21.0-5 2020-06-09 [1] CRAN (R 4.0.2)
testthat 2.3.2 2020-03-02 [1] CRAN (R 4.0.2)
tibble 3.0.3 2020-07-10 [1] CRAN (R 4.0.2)
utf8 1.1.4 2018-05-24 [1] CRAN (R 4.0.2)
V8 3.2.0 2020-06-19 [1] CRAN (R 4.0.2)
vctrs 0.3.1 2020-06-05 [1] CRAN (R 4.0.2)
viridisLite 0.3.0 2018-02-01 [1] CRAN (R 4.0.2)
withr 2.2.0 2020-04-20 [1] CRAN (R 4.0.2)

[1] H:/R/win-library/4.0
[2] C:/Program Files/R/R-4.0.2/library

D – DLL MD5 mismatch, broken installation.

ChinyUgo · September 11, 2020, 8:49am

ChinyUgo · September 11, 2020, 8:50am

ChinyUgo · September 11, 2020, 8:50am

ChinyUgo · September 11, 2020, 8:51am

I sent the print screen as the other one seems to be so muddled up.

Thanks so much

andrjohns · September 11, 2020, 12:14pm

Thanks! Can you try:

install.packages("inline", type = "source")

And then try your model again?

ChinyUgo · September 11, 2020, 12:27pm

just did that now and still model not compiling:
Here is the output from console:
‘H:/rtools40/usr/mingw_/bin/g++’ not foundincomplete final line found on 'H://.R/Makevars.win’incomplete final line found on 'H://.R/Makevars.win’running command ‘C:/PROGRA~1/R/R-40~1.2/bin/x64/R CMD SHLIB file303c3cd27327.cpp 2> file303c3cd27327.cpp.err.txt’ had status 1cannot open file ‘file303c3cd27327.cpp.err.txt’: No such file or directoryError in file(con, “r”) : cannot open the connection
Error in sink(type = “output”) : invalid connection

andrjohns · September 11, 2020, 12:53pm

What do you get from:

packageVersion("inline")

ChinyUgo · September 17, 2020, 12:24pm

Hello andrjohns,
Sorry for delayed communication. I had some internet issue.
I got to run the code today on RStan however attached is the response .
I could not retrieve the answers
What can i do?
Thank you in advance

andrjohns · September 17, 2020, 12:37pm

It looks like there’s a problem with your matrixStats R package. Can you try reinstalling it?

ChinyUgo · October 2, 2020, 9:38am

Hello andrJohn,
Please, I haven’t resolve my issue with rstan yet.
Below is the error message

Error in compileCode(f, code, language = language, verbose = verbose) :
sh: H:/Rtools/mingw_64/bin/g++: No such file or directorymake: *** [C:/PROGRA~1/R/R-40~1.2/etc/x64/Makeconf:229: file3bc03aed1c88.o] Error 127
Error in sink(type = “output”) : invalid connection

andrjohns · October 2, 2020, 12:09pm

Can you post the outputs from:

Sys.getenv("PATH")
Sys.getenv("BINPREF")
readLines("~/.R/Makevars.win")
readLines("~/.Rprofile")
readLines("~/.Renviron")

ChinyUgo · October 2, 2020, 12:12pm

Sys.getenv(“PATH”)
[1] “C:\rtools40\usr\bin;C:\Program Files\R\R-4.0.2\bin\x64;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\System32\WindowsPowerShell\v1.0\;C:\Program Files\MiKTeX 2.9\miktex\bin\x64\;C:\WINDOWS\System32\OpenSSH\;C:\Users\b7023023\AppData\Local\Microsoft\WindowsApps;”
Sys.getenv(“BINPREF”)
[1] “H:/Rtools/mingw_(WIN)/bin/" readLines("~/.R/Makevars.win") [1] "CXX14FLAGS=-O3 -mtune=native -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2" readLines("~/.Rprofile") [1] "Sys.setenv(BINPREF = \"H:/Rtools/mingw_(WIN)/bin/")”
[2] “Sys.setenv(BINPREF = "H:/Rtools/mingw_(WIN)/bin/\")" readLines("~/.Renviron") [1] "PATH=\"{RTOOLS40_HOME}\usr\bin;${PATH}"”

andrjohns · October 2, 2020, 12:14pm

Sorry, can you separate the output by which command it came from? Just so I know which files need to be changed and how

ChinyUgo · October 2, 2020, 12:25pm

Sys.getenv(“PATH”)
[1] “C:\rtools40\usr\bin;C:\Program Files\R\R-4.0.2\bin\x64;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\System32\WindowsPowerShell\v1.0\;C:\Program Files\MiKTeX 2.9\miktex\bin\x64\;C:\WINDOWS\System32\OpenSSH\;C:\Users\b7023023\AppData\Local\Microsoft\WindowsApps;”

ChinyUgo · October 2, 2020, 12:26pm

Sys.getenv(“BINPREF”)
[1] “H:/Rtools/mingw_$(WIN)/bin/”

ChinyUgo · October 2, 2020, 12:26pm

readLines(“~/.R/Makevars.win”)
[1] “CXX14FLAGS=-O3 -mtune=native -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2”

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H:/rtools40/usr/mingw_/bin/g++ not found

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