@MauritsM this HMM seems to be work in serial or in parallel on @mike-lawrence’s Windows computer, so we need to figure out what the difference is. Can you do
and then tell me if you spot a material difference in the Compilation argument compared to:
Compilation argument:
C:/PROGRA~1/R/R-40~1.2/bin/x64/R CMD SHLIB file382c169e3b14.cpp 2> file382c169e3b14.cpp.err.txt
“C:/rtools40/mingw64/bin/“g++ -std=gnu++14 -I"C:/PROGRA~1/R/R-40~1.2/include” -DNDEBUG -I"C:/Users/Mike/Documents/R/win-library/4.0/Rcpp/include/” -I"C:/Users/Mike/Documents/R/win-library/4.0/RcppEigen/include/" -I"C:/Users/Mike/Documents/R/win-library/4.0/RcppEigen/include/unsupported" -I"C:/Users/Mike/Documents/R/win-library/4.0/BH/include" -I"C:/Users/Mike/Documents/R/win-library/4.0/StanHeaders/include/src/" -I"C:/Users/Mike/Documents/R/win-library/4.0/StanHeaders/include/" -I"C:/Users/Mike/Documents/R/win-library/4.0/RcppParallel/include/" -I"C:/Users/Mike/Documents/R/win-library/4.0/rstan/include" -DEIGEN_NO_DEBUG -DBOOST_DISABLE_ASSERTS -DBOOST_PENDING_INTEGER_LOG2_HPP -DSTAN_THREADS -DBOOST_NO_AUTO_PTR -include “C:/Users/Mike/Documents/R/win-library/4.0/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp” -std=c++1y -march=core2 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c file382c169e3b14.cpp -o file382c169e3b14.o