I’m trying to install rstanarm 2.18.2 on supercomputer system and I’m encountering errors when installing.
/opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/StanHeaders/include/stan/math/rev/scal/meta/operands_and_partials.hpp(64): error: more than one partial specialization matches thetemplate argument list of class "stan::math::internal::ops_partials_edge<double, Eigen::Matrix<stan::math::var, -1, 1, 0, -1, 1>>"
"stan::math::internal::ops_partials_edge<double, Eigen::Matrix<stan::math::var, R, C, <expression>, R, C>>"
"stan::math::internal::ops_partials_edge<ViewElt, Eigen::Matrix<Op, R, C, <expression>, R,C>>"
internal::ops_partials_edge<double, Op2> edge2_;
^
Does anyone have an idea of what might be causing this? I’ve read elsewhere on this board that the Intel compiler can cause some challenges. The cluster defaults to icpc, and while switching to gcc is possible, it disables the R installation.
I was able to install rstan and shinystan without much difficulty (though I haven’t tried running anything with them yet).
- Operating System: SuSE 11 (Cray Linux Environment 6)
- rstanarm Version: 2.18.2
Full installation log:
* installing *source* package ‘rstanarm’ ...
** package ‘rstanarm’ successfully unpacked and MD5 sums checked
** libs
"/opt/apps/intel18/cray_mpich_7_7/Rstats/3.5.1/lib64/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/jm.stan
Wrote C++ file "stan_files/jm.cc"
icpc -I"/opt/apps/intel18/cray_mpich_7_7/Rstats/3.5.1/lib64/R/include" -DNDEBUG -I"../inst/include" -I"/opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I"/opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/StanHeaders/include" -I"/opt/tacc_mounts/home1/04386/crpeters/R/x86_64-pc-linux-gnu-library/3.5/rstan/include" -I"/opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/BH/include" -I"/opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/Rcpp/include" -I"/opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/RcppEigen/include" -fPIC -qopenmp -mkl=parallel -O3 -xAVX -axCORE-AVX2 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -lmkl_rt -I/include -O3 -march=native -mtune=native -fPIC -c stan_files/jm.cc -o stan_files/jm.o
icpc: command line warning #10121: overriding '-xAVX' with '-march=native'
In file included from /opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/StanHeaders/include/src/stan/services/optimize/bfgs.hpp(11),
from /opt/tacc_mounts/home1/04386/crpeters/R/x86_64-pc-linux-gnu-library/3.5/rstan/include/rstan/stan_fit.hpp(35),
from /opt/tacc_mounts/home1/04386/crpeters/R/x86_64-pc-linux-gnu-library/3.5/rstan/include/rstan/rstaninc.hpp(3),
from stan_files/jm.hpp(18),
from stan_files/jm.cc(3):
/opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/StanHeaders/include/src/stan/optimization/bfgs.hpp(113): warning #858: type qualifier on return type is meaningless
const size_t iter_num() const { return _itNum; }
^
In file included from /opt/tacc_mounts/home1/04386/crpeters/R/x86_64-pc-linux-gnu-library/3.5/rstan/include/rstan/stan_fit.hpp(56),
from /opt/tacc_mounts/home1/04386/crpeters/R/x86_64-pc-linux-gnu-library/3.5/rstan/include/rstan/rstaninc.hpp(3),
from stan_files/jm.hpp(18),
from stan_files/jm.cc(3):
/opt/tacc_mounts/home1/04386/crpeters/R/x86_64-pc-linux-gnu-library/3.5/rstan/include/rstan/sum_values.hpp(41): warning #858: type qualifier on return type is meaningless
const size_t called() const {
^
In file included from /opt/tacc_mounts/home1/04386/crpeters/R/x86_64-pc-linux-gnu-library/3.5/rstan/include/rstan/stan_fit.hpp(56),
from /opt/tacc_mounts/home1/04386/crpeters/R/x86_64-pc-linux-gnu-library/3.5/rstan/include/rstan/rstaninc.hpp(3),
from stan_files/jm.hpp(18),
from stan_files/jm.cc(3):
/opt/tacc_mounts/home1/04386/crpeters/R/x86_64-pc-linux-gnu-library/3.5/rstan/include/rstan/sum_values.hpp(45): warning #858: type qualifier on return type is meaningless
const size_t recorded() const {
^
/opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h(230): warning #2196: routine is both "inline" and "noinline"
m_actualAlpha, m_blocking, info);
^
detected during:
instantiation of "void Eigen::internal::gemm_functor<Scalar, Index, Gemm, Lhs, Rhs, Dest, BlockingType>::operator()(Index, Index, Index, Index, Eigen::internal::GemmParallelInfo<Index> *) const[with Scalar=stan::math::var, Index=Eigen::Index={std::ptrdiff_t={long}}, Gemm=Eigen::internal::general_matrix_matrix_product<Eigen::Index={std::ptrdiff_t={long}}, stan::math::var, 0, false, stan::math::var, 0, false, 0>, Lhs=Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>,
Rhs=Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>, Dest=Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>, BlockingType=Eigen::internal::gemm_blocking_space<0, stan::math::var, stan::math::var, -1, -1, -1, 1, false>]" at line 124 of "/opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/RcppEigen/include/Eigen/src/Core/products/Parallelizer.h"
instantiation of "void Eigen::internal::parallelize_gemm<Condition,Functor,Index>(const Functor &, Index, Index, Index, bool) [with Condition=true, Functor=Eigen::internal::gemm_functor<stan::math::var, Eigen::Index={std::ptrdiff_t={long}}, Eigen::internal::general_matrix_matrix_product<Eigen::Index={std::ptrdiff_t={long}}, stan::math::var, 0, false, stan::math::var, 0, false, 0>, Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>, Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>,
Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>, Eigen::internal::gemm_blocking_space<0, stan::math::var, stan::math::var, -1, -1, -1, 1, false>>, Index=Eigen::Index={std::ptrdiff_t={long}}]" at line 484
instantiation of "void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 8>::scaleAndAddTo(Dest &, const Lhs &, const Rhs &, const Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 8>::Scalar &) [with Lhs=Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>, Rhs=Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>, Dest=Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>]" at line 435
instantiation of "void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 8>::evalTo(Dst &, const Lhs &, const Rhs &) [with Lhs=Eigen::Matrix<stan::math::var,-1, -1, 0, -1, -1>, Rhs=Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>, Dst=Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>]" at line 148 of "/opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h"
instantiation of "void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, Eigen::internal::enable_if<<expression>, void>::type>::run(DstXprType &, const Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense,Eigen::internal::enable_if<<expression>, void>::type>::SrcXprType &, const
Eigen::internal::assign_op<Scalar, Scalar> &) [with DstXprType=Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>, Lhs=Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>, Rhs=Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>, Options=0, Scalar=stan::math::var]" at line 836 of "/opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h"
[ 3 instantiation contexts not shown ]
instantiation of "Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived> &) [with _Scalar=stan::math::var, _Rows=-1, _Cols=-1, _Options=0, _MaxRows=-1, _MaxCols=-1, OtherDerived=Eigen::Product<Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>, Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>, 0>]" at line 69 of
"/opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/StanHeaders/include/stan/math/prim/mat/fun/MatrixExponential.h"
instantiation of "void Eigen::matrix_exp_pade3(const MatrixType &, MatrixType &, MatrixType &) [with MatrixType=Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>]" at line 190 of "/opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/StanHeaders/include/stan/math/prim/mat/fun/MatrixExponential.h"
instantiation of "void Eigen::matrix_exp_computeUV<MatrixType, Eigen::NumTraits<Eigen::internal::traits<MatrixType>::Scalar>::Real>::run(const MatrixType &, MatrixType &, MatrixType &, int &, T) [with MatrixType=Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>, T=stan::math::var]" at line 23 of"/opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_pade.hpp"
instantiation of "MatrixType stan::math::matrix_exp_pade(const MatrixType &) [with MatrixType=Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>]" at line 30 of "/opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp.hpp"
instantiation of "Eigen::Matrix<T, -1, -1, 0, -1, -1> stan::math::matrix_exp(const Eigen::Matrix<T, -1, -1, 0, -1, -1> &) [with T=stan::math::var]" at line 71 of "/opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/StanHeaders/include/stan/math/rev/mat/fun/matrix_exp_multiply.hpp"
/opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp(223): warning #2196: routine is both "inline" and "noinline"
&res[i * resStride], 1, alpha);
^
detected during:
instantiation of "void Eigen::internal::general_matrix_matrix_product<Index, stan::math::var, LhsStorageOrder, ConjugateLhs, stan::math::var, RhsStorageOrder, ConjugateRhs, 0>::run(Index, Index, Index, const Eigen::internal::general_matrix_matrix_product<Index, stan::math::var, LhsStorageOrder, ConjugateLhs, stan::math::var, RhsStorageOrder, ConjugateRhs, 0>::LhsScalar *, Index, const Eigen::internal::general_matrix_matrix_product<Index, stan::math::var, LhsStorageOrder,
ConjugateLhs, stan::math::var, RhsStorageOrder, ConjugateRhs, 0>::RhsScalar *, Index, Eigen::internal::general_matrix_matrix_product<Index, stan::math::var, LhsStorageOrder, ConjugateLhs, stan::math::var, RhsStorageOrder, ConjugateRhs, 0>::ResScalar *, Index, const Eigen::internal::general_matrix_matrix_product<Index, stan::math::var, LhsStorageOrder, ConjugateLhs, stan::math::var, RhsStorageOrder, ConjugateRhs, 0>::ResScalar &,
Eigen::internal::level3_blocking<stan::math::var, stan::math::var> &, Eigen::internal::GemmParallelInfo<Index> *) [with Index=Eigen::Index={std::ptrdiff_t={long}}, LhsStorageOrder=0, ConjugateLhs=false, RhsStorageOrder=0, ConjugateRhs=false]" at line 230 of "/opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h"
instantiation of "void Eigen::internal::gemm_functor<Scalar, Index, Gemm, Lhs, Rhs, Dest, BlockingType>::operator()(Index, Index, Index, Index, Eigen::internal::GemmParallelInfo<Index> *) const[with Scalar=stan::math::var, Index=Eigen::Index={std::ptrdiff_t={long}}, Gemm=Eigen::internal::general_matrix_matrix_product<Eigen::Index={std::ptrdiff_t={long}}, stan::math::var, 0, false, stan::math::var, 0, false, 0>, Lhs=Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>,
Rhs=Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>, Dest=Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>, BlockingType=Eigen::internal::gemm_blocking_space<0, stan::math::var, stan::math::var, -1, -1, -1, 1, false>]" at line 124 of "/opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/RcppEigen/include/Eigen/src/Core/products/Parallelizer.h"
instantiation of "void Eigen::internal::parallelize_gemm<Condition,Functor,Index>(const Functor &, Index, Index, Index, bool) [with Condition=true, Functor=Eigen::internal::gemm_functor<stan::math::var, Eigen::Index={std::ptrdiff_t={long}}, Eigen::internal::general_matrix_matrix_product<Eigen::Index={std::ptrdiff_t={long}}, stan::math::var, 0, false, stan::math::var, 0, false, 0>, Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>, Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>,
Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>, Eigen::internal::gemm_blocking_space<0, stan::math::var, stan::math::var, -1, -1, -1, 1, false>>, Index=Eigen::Index={std::ptrdiff_t={long}}]" at line 484 of "/opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h"
instantiation of "void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 8>::scaleAndAddTo(Dest &, const Lhs &, const Rhs &, const Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 8>::Scalar &) [with Lhs=Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>, Rhs=Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>, Dest=Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>]" at line 435 of
"/opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h"
instantiation of "void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 8>::evalTo(Dst &, const Lhs &, const Rhs &) [with Lhs=Eigen::Matrix<stan::math::var,-1, -1, 0, -1, -1>, Rhs=Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>, Dst=Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>]" at line 148 of "/opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h"
[ 4 instantiation contexts not shown ]
instantiation of "Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived> &) [with _Scalar=stan::math::var, _Rows=-1, _Cols=-1, _Options=0, _MaxRows=-1, _MaxCols=-1, OtherDerived=Eigen::Product<Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>, Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>, 0>]" at line 69 of
"/opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/StanHeaders/include/stan/math/prim/mat/fun/MatrixExponential.h"
instantiation of "void Eigen::matrix_exp_pade3(const MatrixType &, MatrixType &, MatrixType &) [with MatrixType=Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>]" at line 190 of "/opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/StanHeaders/include/stan/math/prim/mat/fun/MatrixExponential.h"
instantiation of "void Eigen::matrix_exp_computeUV<MatrixType, Eigen::NumTraits<Eigen::internal::traits<MatrixType>::Scalar>::Real>::run(const MatrixType &, MatrixType &, MatrixType &, int &, T) [with MatrixType=Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>, T=stan::math::var]" at line 23 of"/opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_pade.hpp"
instantiation of "MatrixType stan::math::matrix_exp_pade(const MatrixType &) [with MatrixType=Eigen::Matrix<stan::math::var, -1, -1, 0, -1, -1>]" at line 30 of "/opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp.hpp"
instantiation of "Eigen::Matrix<T, -1, -1, 0, -1, -1> stan::math::matrix_exp(const Eigen::Matrix<T, -1, -1, 0, -1, -1> &) [with T=stan::math::var]" at line 71 of "/opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/StanHeaders/include/stan/math/rev/mat/fun/matrix_exp_multiply.hpp"
/opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/StanHeaders/include/stan/math/rev/scal/meta/operands_and_partials.hpp(64): error: more than one partial specialization matches thetemplate argument list of class "stan::math::internal::ops_partials_edge<double, Eigen::Matrix<stan::math::var, -1, 1, 0, -1, 1>>"
"stan::math::internal::ops_partials_edge<double, Eigen::Matrix<stan::math::var, R, C, <expression>, R, C>>"
"stan::math::internal::ops_partials_edge<ViewElt, Eigen::Matrix<Op, R, C, <expression>, R,C>>"
internal::ops_partials_edge<double, Op2> edge2_;
^
detected during:
instantiation of class "stan::math::operands_and_partials<Op1, Op2, Op3, Op4, Op5, stan::math::var> [with Op1=Eigen::Matrix<double, -1, 1, 0, -1, 1>, Op2=Eigen::Matrix<stan::math::var, -1, 1, 0, -1, 1>, Op3=stan::math::var, Op4=double, Op5=double]" at line 68 of "/opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/StanHeaders/include/stan/math/prim/scal/prob/normal_lpdf.hpp"
instantiation of "stan::return_type<T_y, T_loc, T_scale, double, double, double>::type stan::math::normal_lpdf<propto,T_y,T_loc,T_scale>(const T_y &, const T_loc &, const T_scale &) [with propto=false, T_y=Eigen::Matrix<double, -1, 1, 0, -1, 1>, T_loc=Eigen::Matrix<stan::math::var, -1, 1, 0, -1,1>, T_scale=stan::math::var]" at line 118 of "/opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/StanHeaders/include/stan/math/prim/scal/prob/normal_lpdf.hpp"
instantiation of "stan::return_type<T_y, T_loc, T_scale, double, double, double>::type stan::math::normal_lpdf(const T_y &, const T_loc &, const T_scale &) [with T_y=Eigen::Matrix<double, -1, 1, 0, -1, 1>, T_loc=Eigen::Matrix<stan::math::var, -1, 1, 0, -1, 1>, T_scale=stan::math::var]" at line 43 of "/opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/StanHeaders/include/stan/math/prim/scal/prob/normal_log.hpp"
instantiation of "stan::return_type<T_y, T_loc, T_scale, double, double, double>::type stan::math::normal_log(const T_y &, const T_loc &, const T_scale &) [with T_y=Eigen::Matrix<double, -1, 1,0, -1, 1>, T_loc=Eigen::Matrix<stan::math::var, -1, 1, 0, -1, 1>, T_scale=stan::math::var]" at line 3489 of "stan_files/jm.hpp"
instantiation of "void model_jm_namespace::glm_lp(const Eigen::Matrix<T0__, -1, 1, 0, -1, 1> &, const std::vector<int, std::allocator<int>> &, const Eigen::Matrix<T2__, -1, 1, 0, -1, 1> &, const std::vector<T3__, std::allocator<T3__>> &, const int &, const int &, const T6__ &, const Eigen::Matrix<T7__, -1, 1, 0, -1, 1> &, const Eigen::Matrix<T8__, -1, 1, 0, -1, 1> &, T_lp__ &, T_lp_accum__ &, std::ostream *) [with T0__=double, T2__=stan::math::var, T3__=stan::math::var, T6__=double,
T7__=double, T8__=double, T_lp__=stan::math::var, T_lp_accum__=stan::math::accumulator<stan::math::var>]" at line 9498 of "stan_files/jm.hpp"
instantiation of "T__ model_jm_namespace::model_jm::log_prob<propto__,jacobian__,T__>(std::vector<T__, std::allocator<T__>> &, std::vector<int, std::allocator<int>> &, std::ostream *) const [with propto__=true, jacobian__=true, T__=stan::math::var]" at line 46 of "/opt/tacc_mounts/apps/intel18/cray_mpich_7_7/RstatsPackages/3.5.1/packages/StanHeaders/include/src/stan/model/log_prob_propto.hpp"
instantiation of "double stan::model::log_prob_propto<jacobian_adjust_transform,M>(const M&, std::vector<double, std::allocator<double>> &, std::vector<int, std::allocator<int>> &, std::ostream *) [with jacobian_adjust_transform=true, M=stan_model]" at line 1121 of "/opt/tacc_mounts/home1/04386/crpeters/R/x86_64-pc-linux-gnu-library/3.5/rstan/include/rstan/stan_fit.hpp"
instantiation of "SEXP rstan::stan_fit<Model, RNG_t>::log_prob(SEXP, SEXP, SEXP) [with Model=stan_model, RNG_t=boost::random::ecuyer1988]" at line 22 of "stan_files/jm.cc"
compilation aborted for stan_files/jm.cc (code 2)
/opt/apps/intel18/cray_mpich_7_7/Rstats/3.5.1/lib64/R/etc/Makeconf:166: recipe for target 'stan_files/jm.o' failed
make: *** [stan_files/jm.o] Error 2