Hi all, I’ve run into an issue with my brms/RStan install on a Remote Desktop Connection I have set up. I have not run into this issue locally and am able to run brms/RStan fine.
Below is my session info:
> sessionInfo()
R version 4.2.3 (2023-03-15 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19044)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.utf8 LC_CTYPE=English_United States.utf8 LC_MONETARY=English_United States.utf8
[4] LC_NUMERIC=C LC_TIME=English_United States.utf8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] StanHeaders_2.21.0-7 brms_2.19.0 Rcpp_1.0.10
loaded via a namespace (and not attached):
[1] Brobdingnag_1.2-9 gtools_3.9.4 RcppParallel_5.1.7 threejs_0.3.3 shiny_1.7.4 posterior_1.4.1
[7] distributional_0.3.2 stats4_4.2.3 tensorA_0.36.2 pillar_1.9.0 backports_1.4.1 lattice_0.20-45
[13] glue_1.6.2 digest_0.6.31 promises_1.2.0.1 checkmate_2.2.0 colorspace_2.1-0 htmltools_0.5.5
[19] httpuv_1.6.11 Matrix_1.5-3 plyr_1.8.8 dygraphs_1.1.1.6 pkgconfig_2.0.3 rstan_2.21.8
[25] xtable_1.8-4 mvtnorm_1.1-3 scales_1.2.1 processx_3.8.1 later_1.3.1 tibble_3.2.1
[31] bayesplot_1.10.0 generics_0.1.3 farver_2.1.1 ggplot2_3.4.2 ellipsis_0.3.2 DT_0.28
[37] withr_2.5.0 shinyjs_2.1.0 cli_3.6.1 crayon_1.5.2 magrittr_2.0.3 mime_0.12
[43] ps_1.7.5 fansi_1.0.4 nlme_3.1-162 xts_0.13.1 pkgbuild_1.4.0 colourpicker_1.2.0
[49] prettyunits_1.1.1 tools_4.2.3 loo_2.6.0 lifecycle_1.0.3 matrixStats_0.63.0 stringr_1.5.0
[55] munsell_0.5.0 callr_3.7.3 compiler_4.2.3 rlang_1.1.1 grid_4.2.3 htmlwidgets_1.6.2
[61] crosstalk_1.2.0 igraph_1.4.2 miniUI_0.1.1.1 base64enc_0.1-3 codetools_0.2-19 gtable_0.3.3
[67] inline_0.3.19 abind_1.4-5 markdown_1.7 reshape2_1.4.4 R6_2.5.1 gridExtra_2.3
[73] rstantools_2.3.1 zoo_1.8-12 bridgesampling_1.1-2 dplyr_1.1.2 fastmap_1.1.1 utf8_1.2.3
[79] shinystan_2.6.0 shinythemes_1.2.0 stringi_1.7.12 parallel_4.2.3 vctrs_0.6.2 tidyselect_1.2.0
[85] coda_0.19-4
data("mtcars")
head(mtcars)
fit <- brm(mpg ~ cyl + hp, data = mtcars)
When running this fit
I get the following error while compiling Stan program…
Error in compileCode(f, code, language = language, verbose = verbose) :
C:\rtools42\x86_64-w64-mingw32.static.posix\bin/ld.exe: file50d4274be16.o:file50d4274be16.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D0Ev[_ZN3tbb8internal26task_scheduler_observer_v3D0Ev]+0x1d): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'C:\rtools42\x86_64-w64-mingw32.static.posix\bin/ld.exe: file50d4274be16.o:file50d4274be16.cpp:(.text$_ZN3tbb10interface623task_scheduler_observerD1Ev[_ZN3tbb10interface623task_scheduler_observerD1Ev]+0x1d): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'C:\rtools42\x86_64-w64-mingw32.static.posix\bin/ld.exe: file50d4274be16.o:file50d4274be16.cpp:(.text$_ZN3tbb10interface623task_scheduler_observerD1Ev[_ZN3tbb10interface623task_scheduler_observerD1Ev]+0x3a): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'C:\rtools42\x86_64-w64-mingw32.static.posix\bin/ld.exe: file50d4274be16.o:file50d4274be16.cpp:(.text$_ZN3tbb10interface623task_
Error in sink(type = "output") : invalid connection
I have tried installing StanHeaders from source which threw me this error
Error in compileCode(f, code, language = language, verbose = verbose) :
C:\rtools42\x86_64-w64-mingw32.static.posix\bin/ld.exe: file62585e4b425b.o:file62585e4b425b.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D0Ev[_ZN3tbb8internal26task_scheduler_observer_v3D0Ev]+0x1d): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'C:\rtools42\x86_64-w64-mingw32.static.posix\bin/ld.exe: file62585e4b425b.o:file62585e4b425b.cpp:(.text$_ZN3tbb10interface623task_scheduler_observerD1Ev[_ZN3tbb10interface623task_scheduler_observerD1Ev]+0x1d): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'C:\rtools42\x86_64-w64-mingw32.static.posix\bin/ld.exe: file62585e4b425b.o:file62585e4b425b.cpp:(.text$_ZN3tbb10interface623task_scheduler_observerD1Ev[_ZN3tbb10interface623task_scheduler_observerD1Ev]+0x3a): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'C:\rtools42\x86_64-w64-mingw32.static.posix\bin/ld.exe: file62585e4b425b.o:file62585e4b425b.cpp:(.text$_ZN3tbb10interface
Error in sink(type = "output") : invalid connection
I also did run the following:
library(rstan)
stancode <- 'data {real y_mean;} parameters {real y;} model {y ~ normal(y_mean,1);}'
mod <- stan_model(model_code = stancode, verbose = TRUE)
and this was the error
Compilation ERROR, function(s)/method(s) not created!
Error in compileCode(f, code, language = language, verbose = verbose) :
C:\rtools42\x86_64-w64-mingw32.static.posix\bin/ld.exe: file62581ab26063.o:file62581ab26063.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D0Ev[_ZN3tbb8internal26task_scheduler_observer_v3D0Ev]+0x1d): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'C:\rtools42\x86_64-w64-mingw32.static.posix\bin/ld.exe: file62581ab26063.o:file62581ab26063.cpp:(.text$_ZN3tbb10interface623task_scheduler_observerD1Ev[_ZN3tbb10interface623task_scheduler_observerD1Ev]+0x1d): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'C:\rtools42\x86_64-w64-mingw32.static.posix\bin/ld.exe: file62581ab26063.o:file62581ab26063.cpp:(.text$_ZN3tbb10interface623task_scheduler_observerD1Ev[_ZN3tbb10interface623task_scheduler_observerD1Ev]+0x3a): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'C:\rtools42\x86_64-w64-mingw32.static.posix\bin/ld.exe: file62581ab26063.o:file62581ab26063.cpp:(.text$_ZN3tbb10interface
Any advice would be helpful. Thank you!