Hello. I am a beginner in R and I tried to run a stan_model example from the package rstan and I got the following error:
Compilation ERROR, function(s)/method(s) not created!
Error in compileCode(f, code, language = language, verbose = verbose) :
C:/RBuildTools/4.0/ucrt64/bin/…/lib/gcc/x86_64-w64-mingw32/10.3.0/…/…/…/…/x86_64-w64-mingw32/bin/ld.exe: filedec695431c8.o:filedec695431c8.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D0Ev[_ZN3tbb8internal26task_scheduler_observer_v3D0Ev]+0x1d): undefined reference to tbb::internal::task_scheduler_observer_v3::observe(bool)'C:/RBuildTools/4.0/ucrt64/bin/../lib/gcc/x86_64-w64-mingw32/10.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: filedec695431c8.o:filedec695431c8.cpp:(.text$_ZN3tbb10interface623task_scheduler_observerD1Ev[_ZN3tbb10interface623task_scheduler_observerD1Ev]+0x1d): undefined reference to tbb::internal::task_scheduler_observer_v3::observe(bool)'C:/RBuildTools/4.0/ucrt64/bin/…/lib/gcc/x86_64-w64-mingw32/10.3.0/…/…/…/…/x86_64-w64-mingw32/bin/ld.exe: filedec695431c8.o:filedec695431c8.cpp:(.text$_ZN3tbb10interface623task_scheduler_observerD1Ev[_ZN3tbb10interface623task_scheduler_observerD1Ev]+0x3a): undefined reference to `tbb::internal::task_sc
The code to run is:
stancode ← ‘data {real y_mean;} parameters {real y;} model {y ~ normal(y_mean,1);}’
mod ← stan_model(model_code = stancode, verbose = TRUE)
fit ← sampling(mod, data = list(y_mean = 0))
fit2 ← sampling(mod, data = list(y_mean = 5))
If your question relates to installation please provide the following information:
R version 4.2.1 (2022-06-23 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 22000)
RStudio
2022.07.1 Build 554
‘rstan’ version 2.21.5
Session info ───────────────────────────────────────────────────────────────────────────────────
setting value
version R version 4.2.1 (2022-06-23 ucrt)
os Windows 10 x64 (build 22000)
system x86_64, mingw32
ui RStudio
language (EN)
collate German_Germany.utf8
ctype German_Germany.utf8
tz Europe/Berlin
date 2022-08-04
rstudio 2022.07.1+554 Spotted Wakerobin (desktop)
pandoc NA
─ Packages ───────────────────────────────────────────────────────────────────────────────────────
! package * version date (UTC) lib source
backports 1.4.1 2021-12-13 [1] CRAN (R 4.2.0)
BH 1.78.0-0 2021-12-15 [1] CRAN (R 4.2.0)
callr 3.7.1 2022-07-13 [1] CRAN (R 4.2.1)
checkmate 2.1.0 2022-04-21 [1] CRAN (R 4.2.1)
cli 3.3.0 2022-04-25 [1] CRAN (R 4.2.1)
colorspace 2.0-3 2022-02-21 [1] CRAN (R 4.2.1)
crayon 1.5.1 2022-03-26 [1] CRAN (R 4.2.1)
desc 1.4.1 2022-03-06 [1] CRAN (R 4.2.1)
digest 0.6.29 2021-12-01 [1] CRAN (R 4.2.1)
fansi 1.0.3 2022-03-24 [1] CRAN (R 4.2.1)
farver 2.1.1 2022-07-06 [1] CRAN (R 4.2.1)
ggplot2 * 3.3.6 2022-05-03 [1] CRAN (R 4.2.1)
glue 1.6.2 2022-02-24 [1] CRAN (R 4.2.1)
gridExtra 2.3 2017-09-09 [1] CRAN (R 4.2.1)
gtable 0.3.0 2019-03-25 [1] CRAN (R 4.2.1)
inline 0.3.19 2021-05-31 [1] CRAN (R 4.2.1)
isoband 0.2.5 2021-07-13 [1] CRAN (R 4.2.1)
labeling 0.4.2 2020-10-20 [1] CRAN (R 4.2.0)
lattice 0.20-45 2021-09-22 [2] CRAN (R 4.2.1)
lifecycle 1.0.1 2021-09-24 [1] CRAN (R 4.2.1)
loo 2.5.1 2022-03-24 [1] CRAN (R 4.2.1)
magrittr * 2.0.3 2022-03-30 [1] CRAN (R 4.2.1)
MASS 7.3-57 2022-04-22 [2] CRAN (R 4.2.1)
Matrix * 1.4-1 2022-03-23 [2] CRAN (R 4.2.1)
matrixStats 0.62.0 2022-04-19 [1] CRAN (R 4.2.1)
mgcv 1.8-40 2022-03-29 [2] CRAN (R 4.2.1)
munsell 0.5.0 2018-06-12 [1] CRAN (R 4.2.1)
nlme 3.1-157 2022-03-25 [2] CRAN (R 4.2.1)
pillar 1.8.0 2022-07-18 [1] CRAN (R 4.2.1)
pkgbuild 1.3.1 2021-12-20 [1] CRAN (R 4.2.1)
pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.2.1)
prettyunits 1.1.1 2020-01-24 [1] CRAN (R 4.2.1)
processx 3.7.0 2022-07-07 [1] CRAN (R 4.2.1)
ps 1.7.1 2022-06-18 [1] CRAN (R 4.2.1)
R6 2.5.1 2021-08-19 [1] CRAN (R 4.2.1)
RColorBrewer 1.1-3 2022-04-03 [1] CRAN (R 4.2.0)
Rcpp * 1.0.9 2022-07-08 [1] CRAN (R 4.2.1)
RcppEigen * 0.3.3.9.2 2022-04-08 [1] CRAN (R 4.2.1)
D RcppParallel 5.1.5 2022-01-05 [1] CRAN (R 4.2.1)
rlang 1.0.4 2022-07-12 [1] CRAN (R 4.2.1)
rprojroot 2.0.3 2022-04-02 [1] CRAN (R 4.2.1)
rstan * 2.21.5 2022-04-11 [1] CRAN (R 4.2.1)
scales 1.2.0 2022-04-13 [1] CRAN (R 4.2.1)
StanHeaders * 2.21.0-7 2020-12-17 [1] CRAN (R 4.2.1)
tibble 3.1.8 2022-07-22 [1] CRAN (R 4.2.1)
utf8 1.2.2 2021-07-24 [1] CRAN (R 4.2.1)
vctrs 0.4.1 2022-04-13 [1] CRAN (R 4.2.1)
viridisLite 0.4.0 2021-04-13 [1] CRAN (R 4.2.1)
withr 2.5.0 2022-03-03 [1] CRAN (R 4.2.1)
[1] C:/Users/rokam/AppData/Local/R/win-library/4.2
[2] C:/Program Files/R/R-4.2.1/library
D ── DLL MD5 mismatch, broken installation.
writeLines(readLines(file.path(Sys.getenv(“HOME”), “.R/Makevars”)))
Error in file(con, “r”) : cannot open the connection
In addition: Warning message:
In file(con, “r”) :
cannot open file ‘C:/Users/rokam/OneDrive/Dokumente/.R/Makevars’: No such file or directory
Thanks for your help in advance.
Rhay