Try to run stan model:
example(stan_model, package = "rstan", run.dontrun = TRUE)
and getting the error message:
Compilation ERROR, function(s)/method(s) not created!
Error in compileCode(f, code, language = language, verbose = verbose) :
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: C:/Users/nmuravskaya/Documents/R/R-4.0.5/library/rstan/lib/x64/libStanServices.a(stan_fit.o):stan_fit.cpp:(.data$_ZZN5boost4math6detail9bessel_j0IeEET_S3_E2P1[_ZZN5boost4math6detail9bessel_j0IeEET_S3_E2P1]+0x0): multiple definition of `boost::math::detail::bessel_j0<long double>(long double)::P1'; file24703bb523a4.o:file24703bb523a4.cpp:(.rdata$_ZZN5boost4math6detail9bessel_j0IeEET_S3_E2P1[_ZZN5boost4math6detail9bessel_j0IeEET_S3_E2P1]+0x0): first defined hereC:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: C:/Users/nmuravskaya/Documents/R/R-4.0.5/library/rstan/lib/x64/libStanServices.a(stan_fit.o):stan_fit.cpp:(.data$_ZZN5boost4math6detail9bessel_j0IeEET_S3_E2QS[_ZZN5boost4math6detail9bessel_j0IeEET_S3_E2QS]+0x0): multiple definition of `boost::math::detail::bessel_j0<long double>(long double)::QS'; file24703bb523a4.o:fi
In addition: Warning message:
In system(paste(CXX, ARGS), ignore.stdout = TRUE, ignore.stderr = TRUE) :
'C:/rtools40/usr/mingw_/bin/g++' not found
Seems like my question relates to installation so there is following information:
- Operating System: Windows 10 Enterprise, 64-bit OS, x64-based processor
- RStan Version: 2.21.2
- Output of
writeLines(readLines(file.path(Sys.getenv("HOME"), ".R/Makevars")))- n/a - Output of
devtools::session_info("rstan"):
- Session info ---------------------------------------------------------------------------------------------------------------------
setting value
version R version 4.0.5 (2021-03-31)
os Windows >= 8 x64
system x86_64, mingw32
ui RStudio
language (EN)
collate English_United States.1252
ctype English_United States.1252
tz America/Los_Angeles
date 2021-05-20
- Packages -------------------------------------------------------------------------------------------------------------------------
package * version date lib source
backports 1.2.1 2020-12-09 [1] CRAN (R 4.0.3)
BH 1.75.0-0 2021-01-11 [1] CRAN (R 4.0.3)
callr 3.7.0 2021-04-20 [1] CRAN (R 4.0.5)
checkmate 2.0.0 2020-02-06 [1] CRAN (R 4.0.2)
cli 2.5.0 2021-04-26 [1] CRAN (R 4.0.5)
colorspace 2.0-1 2021-05-04 [1] CRAN (R 4.0.5)
crayon 1.4.1 2021-02-08 [1] CRAN (R 4.0.5)
curl 4.3.1 2021-04-30 [1] CRAN (R 4.0.5)
desc 1.3.0 2021-03-05 [1] CRAN (R 4.0.5)
digest 0.6.27 2020-10-24 [1] CRAN (R 4.0.5)
ellipsis 0.3.2 2021-04-29 [1] CRAN (R 4.0.5)
fansi 0.4.2 2021-01-15 [1] CRAN (R 4.0.5)
farver 2.1.0 2021-02-28 [1] CRAN (R 4.0.5)
ggplot2 * 3.3.3 2020-12-30 [1] CRAN (R 4.0.5)
glue 1.4.2 2020-08-27 [1] CRAN (R 4.0.5)
gridExtra 2.3 2017-09-09 [1] CRAN (R 4.0.2)
gtable 0.3.0 2019-03-25 [1] CRAN (R 4.0.2)
inline 0.3.17 2020-12-01 [1] CRAN (R 4.0.5)
isoband 0.2.4 2021-03-03 [1] CRAN (R 4.0.5)
jsonlite 1.7.2 2020-12-09 [1] CRAN (R 4.0.5)
labeling 0.4.2 2020-10-20 [1] CRAN (R 4.0.3)
lattice 0.20-44 2021-05-02 [1] CRAN (R 4.0.5)
lifecycle 1.0.0 2021-02-15 [1] CRAN (R 4.0.5)
loo 2.4.1 2020-12-09 [1] CRAN (R 4.0.5)
magrittr 2.0.1 2020-11-17 [1] CRAN (R 4.0.5)
MASS 7.3-54 2021-05-03 [1] CRAN (R 4.0.5)
Matrix 1.2-18 2019-11-27 [1] CRAN (R 4.0.3)
matrixStats 0.58.0 2021-01-29 [1] CRAN (R 4.0.5)
mgcv 1.8-35 2021-04-18 [1] CRAN (R 4.0.5)
munsell 0.5.0 2018-06-12 [1] CRAN (R 4.0.2)
nlme 3.1-152 2021-02-04 [1] CRAN (R 4.0.5)
pillar 1.6.1 2021-05-16 [1] CRAN (R 4.0.2)
pkgbuild 1.2.0 2020-12-15 [1] CRAN (R 4.0.5)
pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.0.2)
prettyunits 1.1.1 2020-01-24 [1] CRAN (R 4.0.2)
processx 3.5.2 2021-04-30 [1] CRAN (R 4.0.5)
ps 1.6.0 2021-02-28 [1] CRAN (R 4.0.5)
R6 2.5.0 2020-10-28 [1] CRAN (R 4.0.5)
RColorBrewer 1.1-2 2014-12-07 [1] CRAN (R 4.0.0)
Rcpp 1.0.6 2021-01-15 [1] CRAN (R 4.0.5)
RcppEigen 0.3.3.9.1 2020-12-17 [1] CRAN (R 4.0.5)
RcppParallel 5.1.4 2021-05-04 [1] CRAN (R 4.0.5)
rlang 0.4.11 2021-04-30 [1] CRAN (R 4.0.5)
rprojroot 2.0.2 2020-11-15 [1] CRAN (R 4.0.5)
rstan * 2.21.2 2020-07-27 [1] CRAN (R 4.0.2)
scales 1.1.1 2020-05-11 [1] CRAN (R 4.0.2)
StanHeaders * 2.21.0-7 2020-12-17 [1] CRAN (R 4.0.5)
tibble 3.1.1 2021-04-18 [1] CRAN (R 4.0.5)
utf8 1.2.1 2021-03-12 [1] CRAN (R 4.0.5)
V8 3.4.2 2021-05-01 [1] CRAN (R 4.0.5)
vctrs 0.3.8 2021-04-29 [1] CRAN (R 4.0.5)
viridisLite 0.4.0 2021-04-13 [1] CRAN (R 4.0.5)
withr 2.2.0 2020-04-20 [1] CRAN (R 4.0.5)
[1] C:/Users/nmuravskaya/Documents/R/R-4.0.5/library
I had a look at the other similar posts, but they have not worked for me. Any advise would be most appreciated.