Error in compileCode(f, code, language = language, verbose = verbose) Compilation ERROR, function(s)/method(s) not created! g++.exe: error

General
1

Hi,
I am new to Stan, after I install Stan and run function stan, I got the error message as following:

Error in compileCode(f, code, language = language, verbose = verbose) :
Compilation ERROR, function(s)/method(s) not created! g++.exe: error: MSOPROD/syin/Documents/R-3.6.3/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp: No such file or directory
g++.exe: error: MSOPROD/syin/Documents/R-3.6.3/library/StanHeaders/include: No such file or directory
g++.exe: error: MSOPROD/syin/Documents/R-3.6.3/library/RcppEigen/include: No such file or directory
make: *** [D:/ONEDRI~1/syin/DOCUME~1/R-36~1.3/etc/x64/Makeconf:215: file58344932393b.o] Error 1
In addition: Warning message:
In system(cmd, intern = !verbose) :
running command ‘D:/ONEDRI~1/syin/DOCUME~1/R-36~1.3/bin/x64/R CMD SHLIB file58344932393b.cpp 2> file58344932393b.cpp.err.txt’ had status 1
Error in sink(type = “output”) : invalid connection

Before that I already test Rtools as following

pkgbuild::has_build_tools(debug = TRUE)
[1] TRUE

Is there anyone who know how to resolve this problem. Thank you very much for your help.

2

what is your operating system?
which Stan interface, which version are you using - RStan?

3

Can you try the instructions in this post:

4

Hi Mitzi,

5

Hi Andrew,

When I run install.packages( "https://win-builder.r-project.org/9256KcZ01L9C/StanHeaders_2.19.2.zip ", repos = NULL, type = “win.binary”), I got the error
as following:

image002.jpg
image002.jpg1107×103 24.6 KB

6

Try

which has a fixed link to the StanHeaders package.

7

Hi,

I’m also new to stan, and having similar compilation errors in RStudio/Windows 10. I’ve tried following the advice in this thread, as well as other related ones: uninstalling and re-installing the rstan and StanHeaders packages. But errors like these keep popping up:

Error in compileCode(f, code, language = language, verbose = verbose) :
Compilation ERROR, function(s)/method(s) not created! g++.exe: error: Files/Documents/R/win-library/3.5/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp: No such file or directory
g++.exe: error: Files/Documents/R/win-library/3.5/StanHeaders/include: No such file or directory
g++.exe: error: Files/Documents/R/win-library/3.5/RcppEigen/include: No such file or directory
make: *** [C:/PROGRA~1/R/R-35~1.3/etc/x64/Makeconf:215: file3420351217da.o] Error 1
In addition: Warning message:
In system(cmd, intern = !verbose) :
running command ‘C:/PROGRA~1/R/R-35~1.3/bin/x64/R CMD SHLIB file3420351217da.cpp 2> file3420351217da.cpp.err.txt’ had status 1
Error in sink(type = “output”) : invalid connection

I also note that, in attempting to run my code, I get a popup window that tells me I need to install rtools, even though I have the latest version installed. Any assistance you can provide is greatly appreciated.

8

Hi,

I resolved this issue by reinstall R under a new directory to make sure there is no space included in the directory path. My previous directory includes space and after I reinstall R under a new directory without space then it works. Hope it helps.

Shuxin

2 Likes
9

I think that solved it. Thank you!

1 Like