My computing cluster updated its hardware leading to some complications [re]installing Stan. It works fine now, but [unlike earlier] whenever I compile a new/modified model (with stan(model,...)
), the log file generated by R in batch mode saves about 1.5mb worth of compilation text.
Is there perhaps some easy way to stop this?
Running linux w/ Cent07 (details here) with rstan 2.17.3.
Session info and Makevars answers below:
writeLines(readLines(file.path(Sys.getenv("HOME"), ".R/Makevars")))
CXXFLAGS=-O3 -mtune=native -march=native -Wno-unused-variable -Wno-unused-function
CXXFLAGS+= -Wno-unused-local-typedefs
CXXFLAGS+= -Wno-deprecated-declarations
Session info ------------------------------------------------------------------
setting value
version R version 3.5.0 (2018-04-23)
system x86_64, linux-gnu
ui X11
language (EN)
collate en_US.UTF-8
tz EST5EDT,M3.2.0,M11.1.0
date 2018-06-28
Packages ----------------------------------------------------------------------
package * version date source
assertthat 0.2.0 2017-04-11 CRAN (R 3.5.0)
BH 1.66.0-1 2018-02-13 CRAN (R 3.5.0)
cli 1.0.0 2017-11-05 CRAN (R 3.5.0)
colorspace 1.3-2 2016-12-14 CRAN (R 3.5.0)
crayon 1.3.4 2017-09-16 CRAN (R 3.5.0)
dichromat 2.0-0 2013-01-24 CRAN (R 3.5.0)
digest 0.6.15 2018-01-28 CRAN (R 3.5.0)
ggplot2 2.2.1 2016-12-30 CRAN (R 3.5.0)
glue 1.2.0 2017-10-29 CRAN (R 3.5.0)
graphics * 3.5.0 2018-05-01 local
grDevices * 3.5.0 2018-05-01 local
grid 3.5.0 2018-05-01 local
gridExtra 2.3 2017-09-09 CRAN (R 3.5.0)
gtable 0.2.0 2016-02-26 CRAN (R 3.5.0)
inline 0.3.14 2015-04-13 CRAN (R 3.5.0)
labeling 0.3 2014-08-23 CRAN (R 3.5.0)
lattice 0.20-35 2017-03-25 CRAN (R 3.5.0)
lazyeval 0.2.1 2017-10-29 CRAN (R 3.5.0)
magrittr 1.5 2014-11-22 CRAN (R 3.5.0)
MASS 7.3-50 2018-04-30 CRAN (R 3.5.0)
Matrix 1.2-14 2018-04-13 CRAN (R 3.5.0)
methods * 3.5.0 2018-05-01 local
munsell 0.5.0 2018-06-12 CRAN (R 3.5.0)
pillar 1.2.3 2018-05-25 CRAN (R 3.5.0)
plyr 1.8.4 2016-06-08 CRAN (R 3.5.0)
R6 2.2.2 2017-06-17 CRAN (R 3.5.0)
RColorBrewer 1.1-2 2014-12-07 CRAN (R 3.5.0)
Rcpp 0.12.17 2018-05-18 CRAN (R 3.5.0)
RcppEigen 0.3.3.4.0 2018-02-07 CRAN (R 3.5.0)
reshape2 1.4.3 2017-12-11 CRAN (R 3.5.0)
rlang 0.2.1 2018-05-30 CRAN (R 3.5.0)
rstan 2.17.3 2018-01-20 CRAN (R 3.5.0)
scales 0.5.0 2017-08-24 CRAN (R 3.5.0)
StanHeaders 2.17.2 2018-01-20 CRAN (R 3.5.0)
stats * 3.5.0 2018-05-01 local
stats4 3.5.0 2018-05-01 local
stringi 1.2.3 2018-06-12 CRAN (R 3.5.0)
stringr 1.3.1 2018-05-10 CRAN (R 3.5.0)
tibble 1.4.2 2018-01-22 CRAN (R 3.5.0)
tools 3.5.0 2018-05-01 local
utf8 1.1.4 2018-05-24 CRAN (R 3.5.0)
utils * 3.5.0 2018-05-01 local
viridisLite 0.3.0 2018-02-01 CRAN (R 3.5.0)