Hi, I am trying to set up rstan and attempting to run the 8schools example on the set up page. I don’t have write access to the c drive which I think is causing issues with my Rtools, it basically asks me to download rtools over and over again but never actually compiles. Below is the error messa…

Do you have StanHeaders? See [image] Installing RStan (and StanHeaders) on Windows ATM RStan Now do install.packages("rstan", type = "win.binary", dependencies = TRUE) install.packages( "https://win-builder.r-project.org/9256KcZ01L9C/StanHeaders_2.19.2.zip", repos = NULL…

Yes, I downloaded this version of StanHeaders, the Error message is unchanged

OK. The Citrix thing might be messing stuff up. Can you post all of example(stan_model, package = "rstan", run.dontrun = TRUE) ?

Please see below output: stn_md> stancode ← ‘data {real y_mean;} parameters {real y;} model {y ~ normal(y_mean,1);}’ stn_md> mod ← stan_model(model_code = stancode, verbose = TRUE) TRANSLATING MODEL ‘73fc79f8b1915e8208c736914c86d1a1’ FROM Stan CODE TO C++ CODE NOW. successful in parsing the Stan…

2/2 Program source: 1: 2: // includes from the plugin 3: // [[Rcpp::plugins(cpp14)]] 4: 5: // user includes 6: #define STAN__SERVICES__COMMAND_HPP#include <boost/integer/integer_log2.hpp> 7: #include <rstan/rstaninc.hpp> 8: // Code generated by Stan version 2.19.1 9: 10: #include <stan/mo…

And what is the output of system.file("include", "stan", "math", "prim", "mat", "fun", "Eigen.hpp", package = "StanHeaders") ?

[1] “\\mazarsfile04/RoamingProfiles2$/apmurphy/Documents/R/win-library/3.5/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp”

I think the dollar sign in the path is messing things up in the compilation step. What is .libPaths() # note period ?

[image] bgoodri: .libPaths() [1] “\\mazarsfile04/RoamingProfiles2$/apmurphy/Documents/R/win-library/3.5” [2] “C:/Program Files/R/R-3.5.1/library”

If you can install Rcpp, RcppEigen, StanHeaders and BH into [2] rather than [1], it will work.

Compilation error stan/math/prim/mat/fun/Eigen.hpp: No such file or directory

General

bgoodri April 4, 2020, 9:17pm 2

Do you have StanHeaders? See

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Compilation error stan/math/prim/mat/fun/Eigen.hpp: No such file or directory

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