Hi, @andrjohns .
No problem about the delay.
I followed your suggestion and removed all indicated packages plus rstantools.
I will give you several details of the operation and you consider whether it is relevant or not ok.
…
remove.packages(c(“StanHeaders”, “rstan”,“rstantools”))
…
Upon restarting the session after removing them, the following message was displayed:
…
Warning: namespace ‘rstan’ is not available and has been replaced
by .GlobalEnv when processing object ‘.__C__C++Object’
…
And then I installed it again.
…
install.packages(“StanHeaders”, repos = c(“Repository for distributing (some) stan-dev R packages | r-packages”, getOption(“repos”)))
install.packages(“rstan”, repos = c(“Repository for distributing (some) stan-dev R packages | r-packages”, getOption(“repos”)))
install.packages(“rstantools”, repos = c(“Repository for distributing (some) stan-dev R packages | r-packages”, getOption(“repos”)))
…
So I made the rstan package available:
…
library(rstan)
- with output:
Carregando pacotes exigidos: StanHeaders
rstan (Version 2.26.1, GitRev: 2e1f913d3ca3)
For execution on a local, multicore CPU with excess RAM we recommend calling
options(mc.cores = parallel::detectCores()).
To avoid recompilation of unchanged Stan programs, we recommend calling
rstan_options(auto_write = TRUE)
For within-chain threading using reduce_sum() or map_rect() Stan functions,
change threads_per_chain option:
rstan_options(threads_per_chain = 1)
Do not specify ‘-march=native’ in ‘LOCAL_CPPFLAGS’ or a Makevars file
…
And now when specific, the model returns this to me:
…
model ← stan_model(model_name = “Morgan Mercer Flodin”, file = “Enviar forum/mod_MMF.stan”)
- the output (white color):
make cmd is
make -f “C:/PROGRA~1/R/R-40~1.4/etc/x64/Makeconf” -f “C:/PROGRA~1/R/R-40~1.4/share/make/winshlib.mk” -f “D:/Users/Carlos Zarzar/Documents/.R/Makevars.win” CXX=‘(CXX14) (CXX14STD)’ CXXFLAGS=‘(CXX14FLAGS)' CXXPICFLAGS='(CXX14PICFLAGS)’ SHLIB_LDFLAGS=‘(SHLIB_CXX14LDFLAGS)' SHLIB_LD='(SHLIB_CXX14LD)’ SHLIB=“file328c111c5a5c.dll” WIN=64 TCLBIN=64 OBJECTS=“file328c111c5a5c.o”
make would use
if test “zfile328c111c5a5c.o” != “z”; then
if test -e “file328c111c5a5c-win.def”; then
echo “C:/rtools40/mingw64/bin/“g++ -shared -s -static-libgcc -o file328c111c5a5c.dll file328c111c5a5c-win.def file328c111c5a5c.o “D:/Users/Carlos Zarzar/Documents/R/win-library/4.0/rstan/lib/x64/libStanServices.a” -L"D:/Users/Carlos Zarzar/Documents/R/win-library/4.0/StanHeaders/libs/x64” -lStanHeaders -L"D:/Users/Carlos Zarzar/Documents/R/win-library/4.0/RcppParallel/lib/x64” -ltbb -LD:/Users/Carlos Zarzar/Documents/R/win-library/4.0/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"C:/PROGRA~1/R/R-40~1.4/bin/x64" -lR ;
“C:/rtools40/mingw64/bin/“g++ -shared -s -static-libgcc -o file328c111c5a5c.dll file328c111c5a5c-win.def file328c111c5a5c.o “D:/Users/Carlos Zarzar/Documents/R/win-library/4.0/rstan/lib/x64/libStanServices.a” -L"D:/Users/Carlos Zarzar/Documents/R/win-library/4.0/StanHeaders/libs/x64” -lStanHeaders -L"D:/Users/Carlos Zarzar/Documents/R/win-library/4.0/RcppParallel/lib/x64” -ltbb -LD:/Users/Carlos Zarzar/Documents/R/win-library/4.0/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"C:/PROGRA~1/R/R-40~1.4/bin/x64" -lR ;
else
echo EXPORTS > tmp.def;
“C:/rtools40/mingw64/bin/“nm file328c111c5a5c.o | sed -n ‘s/^.* [BCDRT] / /p’ | sed -e ‘/[.]refptr[.]/d’ -e ‘/[.]weak[.]/d’ | sed 's/[^ ][^ ]*/”&”/g’ >> tmp.def;
echo “C:/rtools40/mingw64/bin/“g++ -shared -s -static-libgcc -o file328c111c5a5c.dll tmp.def file328c111c5a5c.o “D:/Users/Carlos Zarzar/Documents/R/win-library/4.0/rstan/lib/x64/libStanServices.a” -L"D:/Users/Carlos Zarzar/Documents/R/win-library/4.0/StanHeaders/libs/x64” -lStanHeaders -L"D:/Users/Carlos Zarzar/Documents/R/win-library/4.0/RcppParallel/lib/x64” -ltbb -LD:/Users/Carlos Zarzar/Documents/R/win-library/4.0/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"C:/PROGRA~1/R/R-40~1.4/bin/x64" -lR ;
“C:/rtools40/mingw64/bin/“g++ -shared -s -static-libgcc -o file328c111c5a5c.dll tmp.def file328c111c5a5c.o “D:/Users/Carlos Zarzar/Documents/R/win-library/4.0/rstan/lib/x64/libStanServices.a” -L"D:/Users/Carlos Zarzar/Documents/R/win-library/4.0/StanHeaders/libs/x64” -lStanHeaders -L"D:/Users/Carlos Zarzar/Documents/R/win-library/4.0/RcppParallel/lib/x64” -ltbb -LD:/Users/Carlos Zarzar/Documents/R/win-library/4.0/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"C:/PROGRA~1/R/R-40~1.4/bin/x64" -lR ;
rm -f tmp.def;
fi
fi
- and the ouput erro (red color):
Error in compileCode(f, code, language = language, verbose = verbose) :
D:/Users/Carlos Zarzar/Documents/R/win-library/4.0/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from 'Eigen::internal::evaluator<Eigen::Product<Lhs, Rhs, Option> >::evaluator(const XprType&) [with Lhs = Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 0; Eigen::internal::evaluator<Eigen::Product<Lhs, Rhs, Option> >::XprType = Eigen::Product<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<Eigen::Matrix<double, -1, 1> > >, Eigen::Matrix<double, -1, -1>, 0>, Eigen::Matrix<double, -1, 1>, 0>]'D:/Us
Além disso: Warning message:
In readLines(file, warn = TRUE) :
linha final incompleta encontrada em ‘D:\Users\Carlos Zarzar\Downloads\Stan_forum\Enviar forum\mod_MMF.stan’
Error in sink(type = “output”) : conexão inválida
…