Sure, @andrjohns . The error I get from that command in particular is xattr: bin/stanc: No such xattr: com.apple.quarantine. I’ll go ahead and include my full R console output for reference:
> cmdstanr::install_cmdstan()
The C++ toolchain required for CmdStan is setup properly!
* Latest CmdStan release is v2.30.1
* Installing CmdStan v2.30.1 in /Users/pokey54/.cmdstan/cmdstan-2.30.1
* Downloading cmdstan-2.30.1.tar.gz from GitHub...
* Download complete
* Unpacking archive...
* Building CmdStan binaries...
cp bin/mac-stanc bin/stanc
clang++ -pipe -Wno-unknown-warning-option -Wno-tautological-compare -Wno-sign-compare -D_REENTRANT -O3 -I stan/lib/stan_math/lib/sundials_6.1.1/include -I stan/lib/stan_math/lib/sundials_6.1.1/src/sundials -DNO_FPRINTF_OUTPUT -O3 -c -x c -include stan/lib/stan_math/lib/sundials_6.1.1/include/stan_sundials_printf_override.hpp stan/lib/stan_math/lib/sundials_6.1.1/src/nvector/serial/nvector_serial.c -o stan/lib/stan_math/lib/sundials_6.1.1/src/nvector/serial/nvector_serial.o
chmod +x bin/stanc
xattr -d com.apple.quarantine bin/stanc
xattr: bin/stanc: No such xattr: com.apple.quarantine
make: *** [bin/stanc] Error 1
make: *** Waiting for unfinished jobs....
Warning message:
There was a problem during installation. See the error message(s) above.
And here’s the details for my R session, although the error above manifests with slight modifications of packages loaded, etc.
> sessionInfo()
R version 4.2.1 (2022-06-23)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Ventura 13.0
Matrix products: default
LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_4.2.1 cli_3.4.1 tools_4.2.1