Running on Mac, installed to Catalina R version 3.6.3 R stan version: 2.19.3 Error in compileCode(f, code, language = language, verbose = verbose) : Compilation ERROR, function(s)/method(s) not created! In file included from <built-in>:1: In file included from /Library/Frameworks/R.framework/V…

You can probably get the binary for StanHeaders as long as you are not using Windows install.packages("StanHeaders", type = "mac.binary") But your clang is still messed up. It should be utilizing /usr/local/clang7/ or something.

In my comupter, the latest Rstan works fine with the latest R on Win10. I also encountered some error about a week ago. Then, I threw away all files related R, and reinstalled them. Then Rstan works fine :)

Sorry–do you mean you just deleted everything?

Yes! I removed everything, including installed packages I am beginner. If you took a lot of time for them,…please try.

Haha…thanks. Yeah, there are a ton of packages. I’ll probably wait for some others to weigh in. But if you’re already on Stan, you’re moving quick, so kudos to you. When I run the install.packages("StanHeaders", type = "mac.binary") I receive the following error: > install.packages("StanHeaders"…

OK. Try install.packages( "https://cran.r-project.org/bin/macosx/el-capitan/contrib/3.6/StanHeaders_2.21.0-1.tgz", repos = NULL, type = "mac.binary")

Awesome, so that downloaded it. However, it’s still not running: when I run the example(stan_model, run.dontrun = TRUE) I still get the same error as above: /usr/local/include/stdint.h:7:10: fatal error: 'zzip/conf.h' file not found #include <zzip/conf.h>

Try adding CXX14 = /usr/local/clang7/bin/clang++ -stdlib=libc++ -nostdinc++ -I/usr/local/clang7/include/c++/v1 to the bottom of ~/.R/Makevars .

[image] bgoodri: CXX14 = /usr/local/clang7/bin/clang++ -stdlib=libc++ -nostdinc++ -I/usr/local/clang7/include/c++/v1 Hmmm–so I didn’t have that file, but I created it the text file within the .R directory and added the code. Still not working, but there isn’t any “Error:” The error I do get …

I’m looking at this thread: Error in compileCode(f, code, language = language, verbose = verbose) : Compilation ERROR, function(s)/method(s) not created! . I tried installing stan from source: however, I get this error: /bin/sh: /usr/local/clang7/bin/clang++: No such file or directory make: *** [ch…

Error when running Rstan with update

Interfaces RStan

bgoodri March 23, 2020, 1:45am 22

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Error when running Rstan with update

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