Error in compileCode(f, code, language = language, verbose = verbose) : Compilation ERROR, function(s)/method(s) not created! Again

Interfaces
22

realised that about a second after posting ;)

[1] “C:/Users/Driver/Documents/R/win-library/4.0/rstan/lib/i386/libStanServices.a”
[2] “C:/Users/Driver/Documents/R/win-library/4.0/rstan/lib/x64/libStanServices.a”

23

OK. That is weird, but then again this whole thread is. When you do

library(rstan)
example(stan_model, run.dontrun = TRUE)

and it gets to the “Compilation arguments” section, does the linker statement have something like -L"C:/Users/Driver/Documents/R/win-library/4.0/rstan/lib/x64/"?

24

It doesn’t seem to:

Compilation argument:
C:/PROGRA~1/R/R-4.0.2/bin/x64/R CMD SHLIB file31847ef54a24.cpp 2> file31847ef54a24.cpp.err.txt
“C:/rtools40/mingw64/bin/“g++ -std=gnu++14 -I"C:/PROGRA~1/R/R-4.0.2/include” -DNDEBUG -I"C:/Users/Driver/Documents/R/win-library/4.0/Rcpp/include/” -I"C:/Users/Driver/Documents/R/win-library/4.0/RcppEigen/include/" -I"C:/Users/Driver/Documents/R/win-library/4.0/RcppEigen/include/unsupported" -I"C:/Users/Driver/Documents/R/win-library/4.0/BH/include" -I"C:/Users/Driver/Documents/R/win-library/4.0/StanHeaders/include/src/" -I"C:/Users/Driver/Documents/R/win-library/4.0/StanHeaders/include/" -I"C:/Users/Driver/Documents/R/win-library/4.0/RcppParallel/include/" -I"C:/Users/Driver/Documents/R/win-library/4.0/rstan/include" -DEIGEN_NO_DEBUG -DBOOST_DISABLE_ASSERTS -DBOOST_PENDING_INTEGER_LOG2_HPP -DSTAN_THREADS -DBOOST_NO_AUTO_PTR -include “C:/Users/Driver/Documents/R/win-library/4.0/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp” -std=c++1y -Wno-ignored-attributes -march=core2 -include C:/Users/Driver/Documents/R/win-library/4.0/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp -I “C:/Users/Driver/Documents/R/win-library/4.0/StanHeaders/include” -I “C:/Users/Driver/Documents/R/win-library/4.0/RcppEigen/include” -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -O3 -mtune=native -march=native -O3 -mtune=native -march=native -c file31847ef54a24.cpp -o file31847ef54a24.o

COMPILING THE C++ CODE FOR MODEL ‘73fc79f8b1915e8208c736914c86d1a1’ NOW.
OS: x86_64, mingw32; rstan: 2.21.1; Rcpp: 1.0.5; inline: 0.3.15

setting environment variables:
PKG_LIBS = C:/Users/Driver/Documents/R/win-library/4.0/rstan/lib/x64/libStanServices.a -L"C:/Users/Driver/Documents/R/win-library/4.0/StanHeaders/libs/x64" -lStanHeaders -L"C:/Users/Driver/Documents/R/win-library/4.0/RcppParallel/lib/x64" -ltbb
PKG_CPPFLAGS = -I"C:/Users/Driver/Documents/R/win-library/4.0/Rcpp/include/" -I"C:/Users/Driver/Documents/R/win-library/4.0/RcppEigen/include/" -I"C:/Users/Driver/Documents/R/win-library/4.0/RcppEigen/include/unsupported" -I"C:/Users/Driver/Documents/R/win-library/4.0/BH/include" -I"C:/Users/Driver/Documents/R/win-library/4.0/StanHeaders/include/src/" -I"C:/Users/Driver/Documents/R/win-library/4.0/StanHeaders/include/" -I"C:/Users/Driver/Documents/R/win-library/4.0/RcppParallel/include/" -I"C:/Users/Driver/Documents/R/win-library/4.0/rstan/include" -DEIGEN_NO_DEBUG -DBOOST_DISABLE_ASSERTS -DBOOST_PENDING_INTEGER_LOG2_HPP -DSTAN_THREADS -DBOOST_NO_AUTO_PTR -include “C:/Users/Driver/Documents/R/win-library/4.0/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp” -std=c++1y

25

What is the next line after

...
file31847ef54a24.cpp -o file31847ef54a24.o

?

26

I can’t find file31847ef54a24.cpp in the output?

27

It will be a different filename each time, but it is whatever is after the end of what you posted previously

28
29

I was looking for

C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file31846453fbf.dll tmp.def file31846453fbf.o -LC:/PROGRA~1/R/R-4.0.2/bin/x64 -lR

which is the same as what @andrjohns got. It can be worked around by doing

but we still don’t know why PKG_LIBS is not working in the first place.

30

Doesn’t work. Gist is updated with output.

31

Maybe

Sys.setenv(LOCAL_LIBS = paste(
shQuote('C:/R/win-library/4.0/rstan/lib/x64/libStanServices.a'),
"-L", shQuote('C:/R/win-library/4.0/StanHeaders/libs/x64'),
" -lStanHeaders -L", shQuote('C:/R/win-library/4.0/RcppParallel/lib/x64'),
" -ltbb"))

?
?

32

Still get:

Error in compileCode(f, code, language = language, verbose = verbose) :
Compilation ERROR, function(s)/method(s) not created! g++.exe: error: C:/R/win-library/4.0/rstan/lib/x64/libStanServices.a: No such file or directory

pm’d you in case it’s helpful.

33

OK. @Charles_Driver and I have likely tracked down the problem over Zoom.

35

The solution has to go into rstan. I’ll have binaries on winbuilder to test with in about an hour.

36

thank you!!

37

@andrjohns @Charles_Driver @JacobCoblentz

In a clean R session without any old stanfit objects being autoloaded, try doing

install.packages(
"https://win-builder.r-project.org/8bPDZPDG0522/rstan_2.21.2.zip",
repos = NULL, type = "win.binary")

then

example(stan_model, package = "rstan", run.dontrun = TRUE)

plus whatever examples were not working before.

1 Like
38

yes, seems to be working now :)

41

works perfectly!

42

@bgoodri
Hi, thank you! However, a new error comes up.

Error: package or namespace load failed for ‘rstan’ in inDL(x, as.logical(local), as.logical(now), …):
unable to load shared object ‘C:/Users/Ihn-Whi Heo/Documents/R/win-library/3.6/rstan/libs/x64/rstan.dll’:
LoadLibrary failure: 지정된 프로시저를 찾을 수 없습니다 (cannot find the allocated procedure).
In addition: Warning message:
package ‘rstan’ was built under R version 4.0.2

What should I do?

43

Do you know what 지정된 프로시저를 찾을 수 없습니다 says in English?

44

Sure. That means “cannot find the allocated procedure”