Ben, I have @coatless’s installer and changed Makevars accordingly and then ran rstan::stan_model with bar.stan (3.6 KB) .
n=1000
x=-log(runif(n))
library(rstan)
fitted_model = stan_model(file='bar.stan')
stan_data <- list(y=x, N = n, ymin = 0)
stan_fit = sampling(fitted_model, data = stan_data)
Same thing happens:
Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup)
[1] “Error in sampler$call_sampler(args_list[[i]]) : "
[2] " c++ exception (unknown reason)”
Was this what you wanted?
My Makevars looks like this now:
CFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk
CCFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk
CXXFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk
CPPFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include
SHLIB_CXX14LD = /usr/local/clang7/bin/clang++ -L$(R_HOME)/lib/libc++.1.dylib