cmdStan output to R, or dev branch in Rstan

[anon79882417]

Rstan::read_stan_csv chokes on NaN

For some reason rstan will not let me load output files with NaN values (which happen because the model program covers a variety of model types and outputs some irrelevant values). Is there a flag to create the object anyway? > tp <- rstan::read_stan_csv(csvfiles=dir(pattern='output-chain-.\\.csv')) Error in validObject(.Object) : invalid class “stanfit” object: The following variables have undefined values: predicted_district_delta.1,The following variables have undefined values: predi…

has to do with this issue. it doesn’t like nan and quantiles are irrelevant in this setting when we’re using MAP (i think with BFGS we’re optimizing parameters jointly, is MAP the correct way to think about this?).