Is there a way to get unconstrained parameters with warmup without the permutations in rstan? Like extract(fit, unconstrained = TRUE, permuted = FALSE, inc_warmup = TRUE)?

As.matrix for unconstrained parameters

bgoodri October 22, 2019, 2:49pm 2

Not really. You can call unconstrain_pars once per iteration or you can specify diagnostic_file and read in the unconstrained parameters from the CSV.

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As.matrix for unconstrained parameters

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