Hi all, I’m trying to run my stan code, using rstan package, on linux server, It seems there is an error in compiling the stan code. Here is the Error message I get: During startup - Warning messages: 1: Setting LC_CTYPE failed, using “C” 2: Setting LC_COLLATE failed, using “C” 3: Setting LC_T…

You are right. We have the same problem becuase we are using the same server

Try removing “-mtune=native -march=native” from the CFLAGS. It is likely that you have a heterogeneous server architecture on your cluster. The model is likely compiled once on one node, and then tried to run on a different node with a different CPU, and so it fails. If you remove those CFLAGS, it …

Thank you aaronjg for your reply. I did what you suggested and removed the statement. However, I got the same error message. In a second trial, I removed the -O3 flags and added yours but nothing changed. The sanme error message appeared.

Do you have auto write turned on? It may not be recompiling. Check the project directory for .rds files that are storing the compiled model, if you find these, try deleting them and rerunning.

Do you mean this code: rstan_options(auto_write = TRUE) No, I do not use it. There is not any file with the extension .rds in the directory.

1: Setting LC_CTYPE failed, using “C” 2: Setting LC_COLLATE failed, using “C” 3: Setting LC_TIME failed, using “C” 4: Setting LC_MESSAGES failed, using “C” 5: Setting LC_MONETARY failed, using “C” 6: Setting LC_PAPER failed, using “C” 7: Setting LC_MEASUREMENT failed, using “C” For what it’…

Compilation error on Linux server

General

jjramsey August 10, 2018, 6:33pm 2

Looks like someone else had a similar problem: Using Rstan on a cluster

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Compilation error on Linux server

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