My colleagues and I just published a paper using Stan for estimating temporal prevalence of pathogens in invasive wild pigs in the USA.
@article{tabak_detection_nodate,
title = {Detection error influences both temporal seroprevalence predictions and risk factors associations in wildlife disease models},
url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/ece3.5558},
doi = {10.1002/ece3.5558},
language = {en},
number = {0},
urldate = {2019-08-27},
journal = {Ecology and Evolution},
author = {Tabak, Michael A. and Pedersen, Kerri and Miller, Ryan S.},
}
The Stan code for the epidemiology model used in the paper is available on my github reprository that I just started to share code like this. It is also available in the supplementary materials from the URL above.
Tabak, M. A., Pedersen, K., & Miller, R. S. 2019 (In Press). Detection error influences both temporal seroprevalence predictions and risk factors associations in wildlife disease models. Ecology and Evolution. doi:10.1002/ece3.5558