Hello,
I started with some testing from people of my lab, but…
I would like to have a better feeling whether my Stan R package encounters problem for third party installation. Would you like to try it and report any error?
ARMET-tc infers rates of changes in tissue composition across covariates of interest (e.g., treatment status, time or disease grade)
# Installation
library(devtools)
install_github("stemangiola/ARMET", args = "--preclean", build_vignettes = FALSE, auth_token = "37c5c6238136a6804d336d9a7078eece993ce870", password="x-oauth-basic")
library(ARMET)
# Inference
results =
ARMET_tc(
mix = test_data$mix,
my_design = test_data$design_matrix,
cov_to_test = test_data$cov_to_test,
do_debug = F
)
# Report
ARMET_getFit(results)
ARMET_plotFit(results, "immune_cell")
Thanks!